Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00221 ATGAGACCTATTTTCTGTGGAAATTTTGAGTTTGATGCCCGCCCCTCCGAGCTAGAACGATTGTTCAGAAAATATGGCAGGGTTGATCGAGTGGATATGAAGTCTGCAGGGTTTGCTTTCATCTACATGGAAGATGAGAGGGATGCTGAATATGCAATTCGTGGTCTTGATAGGGTAGAATATGGTAGGAAGGGGCGCAGACTTCGTGTTGAATGGACTAAGCACGAACGTGGTGTTAGGAAGCCTCGTGGTTCCAGAAGAGCTTCAGCTAATATGAGGCCGTCAAAGACCTTATTTGTTATTAACTTTGATCCTTACAGTACAAAAACAAGGGATTTGGAGAAGCACTTTGAACCTTATGGGAAGATTGTTAGTGTAAGGATTAGAAGAAATTTTGCATTTGTTCAATATGAATCAGAGGACGATGCCATCAGGGCATTGGATGCTACAAACATGAGCAAGTTGCTCGATCGAGTGATTTCTGTTGAATTTTCTGAAAGGGATGATGATGAAAAACGAAATGGGTATAGCCCTGACCAAGGGCGAGATCGACGGCGATCTCGAAGCCCCTATCATAGAGAGAGAGGCAGCCCTGATTATGGTCGTGGTTCCTGTGCATACAAAAGGGAAAGGGGAAGCCCGGATTATGGTTGCGATAGAAGCCCGTATCATGGACGTGATCGAAGCCCCATCCCTCACAGGAGGGATAGGGGCAGTCCTGATTATGGCCGTGATCGTATCAGAAGCCCCCATCGTAGGGAGAGAGGTGAGAGGGGGAGCCCATATTATAGCCATCGCACAAGTAGTCCTCACCGTGCTGAGAAGTCCTCTTCTGACCATGGTCATGGCAGAAGCCGAAGCCCTTACCAAAGGGAGGTTGCAAGACCTGCTCATGGCAACAACCACAGTCCTAGTCCTAGTAGAAATGACAAAGCAAGCCCTCTAATTGACAAAGCTTCTGTTCGTAGTCCTTATGATGGAGAGAAGTCTAGTCCTGAAAACGGTGAAGTGGTCATGGACGATAGCCCTTATGCTAGGGAGAAGGCCAGTCCCCGCAATGGTAGTGAAGGGACTTCCTTGGCAGACGCTCAGGACAGTCCCAACTATGGTGGCCCAGAAAGCCCTGTAGATGAAAGATATAGCAGTCGTTCGCCCCCAGCTGAGGAATGA 1170 0.4803 MRPIFCGNFEFDARPSELERLFRKYGRVDRVDMKSAGFAFIYMEDERDAEYAIRGLDRVEYGRKGRRLRVEWTKHERGVRKPRGSRRASANMRPSKTLFVINFDPYSTKTRDLEKHFEPYGKIVSVRIRRNFAFVQYESEDDAIRALDATNMSKLLDRVISVEFSERDDDEKRNGYSPDQGRDRRRSRSPYHRERGSPDYGRGSCAYKRERGSPDYGCDRSPYHGRDRSPIPHRRDRGSPDYGRDRIRSPHRRERGERGSPYYSHRTSSPHRAEKSSSDHGHGRSRSPYQREVARPAHGNNHSPSPSRNDKASPLIDKASVRSPYDGEKSSPENGEVVMDDSPYAREKASPRNGSEGTSLADAQDSPNYGGPESPVDERYSSRSPPAEE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00221 389 Gene3D - 85 207 IPR012677 -
Pte16g00221 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Pte16g00221 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Pte16g00221 389 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 320 - -
Pte16g00221 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 75 IPR000504 GO:0003723
Pte16g00221 389 SMART rrm1_1 97 163 IPR000504 GO:0003723
Pte16g00221 389 SMART rrm1_1 3 71 IPR000504 GO:0003723
Pte16g00221 389 MobiDBLite consensus disorder prediction 166 261 - -
Pte16g00221 389 MobiDBLite consensus disorder prediction 166 389 - -
Pte16g00221 389 SUPERFAMILY RNA-binding domain, RBD 2 168 IPR035979 GO:0003676
Pte16g00221 389 Gene3D - 1 76 IPR012677 -
Pte16g00221 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Pte16g00221 389 MobiDBLite consensus disorder prediction 268 291 - -
Pte16g00221 389 FunFam Serine/arginine-rich splicing factor RS31 88 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00221 Pte-Chr16 2758479 2762155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00221 4 172 Eukaryotic Initiation Factors Gene Family AT1G49760 24.324 2.76e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00221 K12893 - qsa:O6P43_005551 520.005