Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00217 ATGGAAGACAATTCTTCTCATGCAAACGTGCCTCAAAGTGACGCGCCCCTCTCAACGACCAATTCCACAGCCACGGCCACAGCGGCGGCACCAACGTCATTGTCCTCGCCGAGAGAGGTACATTCTCCGAGTGGTCGAGCTTCTAGTCAGCAGCATGCATCTAGGAGGCATTCAAAGTACAGAGGGATCAGATGCAGGAGTGGGAAATGGGTTTCAGAGATAAGGGAGCCACGTAAAACAACGCGCATTTGGCTTGGTACGTATCCTAATCCGGAGATGGCAGCTGCTGCTTATGATGTTGCTGCTCTTGCATTGAAAGGACCAGACGCCCCTCTTAACTTTCCTGAATTGCTACACTCCTATCCGATACCCACTTCAACTTCTGCAACCGATATAAGAGCGGCAGCTTCCTTGGCTTCTGAGGCTAGGCTGGCGAAACAAGACGAAGCTGTTGAAAACCAAGAATTATGTAGTGGCCAATCAGCCATTACTGGAGAGGAATTCATTGACGAGGATGAACTGTTGAATATGCCAAATTTGCTAGTTGATATGGCTGGCGGAATGCTAGTCAGCCCCCCGAGGATAACGTCACCATCATCTGATAACTCTCCGGGAAGCTCAGAGGGAGACAGCCTTTGGAGCTACACATGA 651 0.5023 MEDNSSHANVPQSDAPLSTTNSTATATAAAPTSLSSPREVHSPSGRASSQQHASRRHSKYRGIRCRSGKWVSEIREPRKTTRIWLGTYPNPEMAAAAYDVAALALKGPDAPLNFPELLHSYPIPTSTSATDIRAAASLASEARLAKQDEAVENQELCSGQSAITGEEFIDEDELLNMPNLLVDMAGGMLVSPPRITSPSSDNSPGSSEGDSLWSYT* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00217 216 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Pte16g00217 216 FunFam Ethylene-responsive transcription factor 2 58 116 - -
Pte16g00217 216 PRINTS Ethylene responsive element binding protein signature 97 117 IPR001471 GO:0003700|GO:0006355
Pte16g00217 216 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Pte16g00217 216 MobiDBLite consensus disorder prediction 193 216 - -
Pte16g00217 216 MobiDBLite consensus disorder prediction 1 61 - -
Pte16g00217 216 MobiDBLite consensus disorder prediction 191 216 - -
Pte16g00217 216 MobiDBLite consensus disorder prediction 1 51 - -
Pte16g00217 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 43 186 - -
Pte16g00217 216 SMART rav1_2 59 121 IPR001471 GO:0003700|GO:0006355
Pte16g00217 216 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Pte16g00217 216 CDD AP2 58 117 IPR001471 GO:0003700|GO:0006355
Pte16g00217 216 ProSiteProfiles AP2/ERF domain profile. 59 115 IPR001471 GO:0003700|GO:0006355
Pte16g00217 216 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00217 Pte-Chr16 2685908 2687670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00217 54 217 AP2-EREBP Transcription Factor Family AT5G52020 60.571 1.40e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte16g00217 AP2 1.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00217 - - qsa:O6P43_008271 226.868