Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00213 ATGGGTAAGGGCGGTATGTCGCTAGAAGGAGATGGGAATAGCAAAAATAGTGAACAACAAAATATGGCTGCCTGGCTTGTTGCTGTGAACACTCTCAAGATTCAACCTTTCAACCTTCCTGCACTTGGACCCCATGATGTCAAAGTCAGGATGAAGGCTGTTGGTATATGTGGGAGCGATGTTCACTACCTCAAGACTCTGAGATGTGCACATTTTGTTGTGAAAGAGCCAATGGTTATCGGACATGAATGCGCTGGTATTATAGAGGAAGTTGGGTGTGAGGTGAAAACACTGGTGCCGGGTGACCGTGTGGCACTGGAGCCCGGCATTAGTTGCTGGCATTGTGATCATTGCAAGGAAGGTCGATACAATCTCTGCCCTGACATGAAGTTCTTTGCTACTCCCCCAGTTCATGGCTCCCTAGCTAATCAGATAGTGCATCCAGCAAATCTTTGTTTCAAATTGCCGGATAATGTGAGTTTGGAGGAGGGAGCAATGTGTGAGCCATTGAGTGTTGGGATTCATGCTTGTCGCAGAGCTGTCATTGGTCCTGAAACAAATGTGTTGATCATGGGAGCTGGACCCATAGGACTTGTCACTTTGCTCGCTGCCCGCGCATTTGGTGCGCCCAGAATTACAATTGTTGATGTGGATGATTACCGTTTGTCTGTTGCCAAAACCCTTGGGGCTGATGAGATCGTTAAAGTCTCAACCAACATGCAGGATATATATGATGAAGTTGAACAGATACATAATGCCATGGGAGGTAGAATAGACGTGAGCTTTGACTGTGCAGGGTTCAACAAAACTATGTCTACTGCATTGGCTGCTACTTGTTCAGGTGGAAAAGTTTGCCTTGTGGGGATGGGACATAATGAAATGACAGTGCCACTCACTCCAGCTGCTGCTAGGGAAGTTGATGTGATTGGCATTTTCCGGTATAAGAACACATGGCCTCTATGTCTTGAATTTCTGAGGAGTGGGAAGATTGACGTGAAGCCCCTTATAACACACAGGTTTGGATTTTCTCAGAAAGATATAGAAGAAGCCTTTGAAACGAGTGCACGCGGGGGGAGTGCCATCAAGGTCATGTTCAATCTGTAG 1104 0.4647 MGKGGMSLEGDGNSKNSEQQNMAAWLVAVNTLKIQPFNLPALGPHDVKVRMKAVGICGSDVHYLKTLRCAHFVVKEPMVIGHECAGIIEEVGCEVKTLVPGDRVALEPGISCWHCDHCKEGRYNLCPDMKFFATPPVHGSLANQIVHPANLCFKLPDNVSLEEGAMCEPLSVGIHACRRAVIGPETNVLIMGAGPIGLVTLLAARAFGAPRITIVDVDDYRLSVAKTLGADEIVKVSTNMQDIYDEVEQIHNAMGGRIDVSFDCAGFNKTMSTALAATCSGGKVCLVGMGHNEMTVPLTPAAAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKDIEEAFETSARGGSAIKVMFNL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00213 367 SMART PKS_ER_names_mod 28 365 IPR020843 GO:0016491
Pte16g00213 367 Gene3D - 31 354 - -
Pte16g00213 367 Pfam Alcohol dehydrogenase GroES-like domain 44 155 IPR013154 -
Pte16g00213 367 Gene3D - 172 312 - -
Pte16g00213 367 CDD sorbitol_DH 23 366 IPR045306 GO:0016616
Pte16g00213 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 81 95 IPR002328 GO:0008270|GO:0016491
Pte16g00213 367 PANTHER SORBITOL DEHYDROGENASE 19 367 - -
Pte16g00213 367 Pfam Zinc-binding dehydrogenase 195 325 IPR013149 -
Pte16g00213 367 SUPERFAMILY GroES-like 22 194 IPR011032 -
Pte16g00213 367 FunFam Sorbitol dehydrogenase 172 312 - -
Pte16g00213 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 331 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00213 Pte-Chr16 2651837 2654528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00213 34 300 Monolignol Biosynthesis Gene Families AT4G37980 26.882 7.60e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00213 K00008 - jre:108998559 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00213 16 2651837 2654528 Pte16g00213 16 2651837 2654528 RCT