Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00207 ATGGGAAGAGGTAGAGTTGTGCTGGAGAGGATAGAGAACAAGCTTAACAGGCAAGTAACATTCTCAAAGCGCAGGAATGGTCTACTAAAGAAAGCCTATGAGCTATCTGTGCTATGTGATGCTGAGGTTGCCCTCATTATGTTCTCCAGCCGTGGAAAGCTCTCCCAGTTTTGTAGCAACAACATTGAGAAAACCCTTGAGCGGTATCGCCAGTGCAGCTACAACTCAAATGATATTGAACTTGACTCCAAGACTTTACAAGAGGAGGTCTTGAAATTAAGAGCCAGTTGCGAATCTCTTCAGCGTTCTCAAAGGCATTTTCTGGGTGAAGATATTGAAGAGCTTAAAATAAAAGAGCTGCAAGAACTTGAGAAACTGATCGATGGGACACTTTCACTAGCTAGGCAACGCAAGACTGCACTGATGTTTGAGCGAATGGAAGAGCTACGGGAAAAGCTTGAGGAGGGGATTCAACGACCTGGGATGATTTATAAGGACATTGCAGGAGAAGATGTAGCTGAAGATGTGAACAATTTCGATGTGCATGGTGCACCAAATTAA 561 0.4385 MGRGRVVLERIENKLNRQVTFSKRRNGLLKKAYELSVLCDAEVALIMFSSRGKLSQFCSNNIEKTLERYRQCSYNSNDIELDSKTLQEEVLKLRASCESLQRSQRHFLGEDIEELKIKELQELEKLIDGTLSLARQRKTALMFERMEELREKLEEGIQRPGMIYKDIAGEDVAEDVNNFDVHGAPN* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00207 186 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pte16g00207 186 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Pte16g00207 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte16g00207 186 FunFam MADS-box transcription factor 1 13 84 - -
Pte16g00207 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 151 - -
Pte16g00207 186 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Pte16g00207 186 Coils Coil 83 103 - -
Pte16g00207 186 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte16g00207 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte16g00207 186 Pfam K-box region 82 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte16g00207 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte16g00207 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte16g00207 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte16g00207 186 ProSiteProfiles K-box domain profile. 83 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte16g00207 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00207 Pte-Chr16 2414577 2418104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00207 1 152 MADS-box Gene Family AT2G45650 60.645 3.71e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte16g00207 K-box 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00207 K09264 - jre:108998622 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00207 16 2414577 2418104 Pte16g00207 16 2414577 2418104 RCT