Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00199 ATGGCCATGAGAGCGGCGGCTATGGCGGTGGCGGAGGCGGGGCCTTCCCGCCTAAGGAGACTCTTCTGTAGTTCAGTTCCATCATTTATTCCTCCTCCAATCCTGGAAACGTTCCTGCCCGTGAGACTGCCGAACCAAATTGCAACCTTTTCGTCTCTGAAACGTCAATCCACCACTGAACTTCAGTCTAAACCATTTGGACTTTACATTGTATGTCTATGGTTCCTTTGCTCAGGGCTTAACAAAAGAACTACTACTGAGAAACTACAGGAGGCATTTTCTGCATTTGGAGAAGTTGTTCACGCTAGGGTGGTGACTGATCGTGTTTCAGGATTCTCTAAAGGGTTTGGTTTTGTAAGATATGCAACCATAGAAGAGGCCGCTAAAGGCATTGAGGGTATGGATGGCAAGTTTCTTGATGGCTGGGTTATATTTGCTGAGTATGCAAGGCCGAGACAACCATTTCCACCGCCTAATAATTTCAACACTCCTCCATATGGCAGGCAGTGA 510 0.4725 MAMRAAAMAVAEAGPSRLRRLFCSSVPSFIPPPILETFLPVRLPNQIATFSSLKRQSTTELQSKPFGLYIVCLWFLCSGLNKRTTTEKLQEAFSAFGEVVHARVVTDRVSGFSKGFGFVRYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRQPFPPPNNFNTPPYGRQ* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00199 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Pte16g00199 169 Gene3D - 71 155 IPR012677 -
Pte16g00199 169 SUPERFAMILY RNA-binding domain, RBD 78 167 IPR035979 GO:0003676
Pte16g00199 169 SMART rrm1_1 74 147 IPR000504 GO:0003723
Pte16g00199 169 PANTHER NUCLEOLAR PROTEIN 8 78 156 - -
Pte16g00199 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 141 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00199 Pte-Chr16 2337650 2340582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00199 79 165 Eukaryotic Initiation Factors Gene Family AT1G34140 33.708 1.08e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00199 - - pmum:103326359 159.458