Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte16g00199 | ATGGCCATGAGAGCGGCGGCTATGGCGGTGGCGGAGGCGGGGCCTTCCCGCCTAAGGAGACTCTTCTGTAGTTCAGTTCCATCATTTATTCCTCCTCCAATCCTGGAAACGTTCCTGCCCGTGAGACTGCCGAACCAAATTGCAACCTTTTCGTCTCTGAAACGTCAATCCACCACTGAACTTCAGTCTAAACCATTTGGACTTTACATTGTATGTCTATGGTTCCTTTGCTCAGGGCTTAACAAAAGAACTACTACTGAGAAACTACAGGAGGCATTTTCTGCATTTGGAGAAGTTGTTCACGCTAGGGTGGTGACTGATCGTGTTTCAGGATTCTCTAAAGGGTTTGGTTTTGTAAGATATGCAACCATAGAAGAGGCCGCTAAAGGCATTGAGGGTATGGATGGCAAGTTTCTTGATGGCTGGGTTATATTTGCTGAGTATGCAAGGCCGAGACAACCATTTCCACCGCCTAATAATTTCAACACTCCTCCATATGGCAGGCAGTGA | 510 | 0.4725 | MAMRAAAMAVAEAGPSRLRRLFCSSVPSFIPPPILETFLPVRLPNQIATFSSLKRQSTTELQSKPFGLYIVCLWFLCSGLNKRTTTEKLQEAFSAFGEVVHARVVTDRVSGFSKGFGFVRYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRQPFPPPNNFNTPPYGRQ* | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte16g00199 | 169 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 151 | IPR000504 | GO:0003723 | |
Pte16g00199 | 169 | Gene3D | - | 71 | 155 | IPR012677 | - | |
Pte16g00199 | 169 | SUPERFAMILY | RNA-binding domain, RBD | 78 | 167 | IPR035979 | GO:0003676 | |
Pte16g00199 | 169 | SMART | rrm1_1 | 74 | 147 | IPR000504 | GO:0003723 | |
Pte16g00199 | 169 | PANTHER | NUCLEOLAR PROTEIN 8 | 78 | 156 | - | - | |
Pte16g00199 | 169 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 77 | 141 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte16g00199 | Pte-Chr16 | 2337650 | 2340582 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte16g00199 | 79 | 165 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 33.708 | 1.08e-09 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte16g00199 | - | - | pmum:103326359 | 159.458 |