Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00197 ATGCCTTCACTACCTATTGTTGATGCTCGTATGATTGAGACTGTGAACGAGAAGAAGGACAAGAAGAAGAAGATGAAGCAGGAAGAAGCTTCGGCCGAGAAGAAGGTGAAGAAGAAATTGAAAGAGAAAGAGAGTGGTAAGAAGCGTAAAGCTTTGGAATATGATGGGGAGGAAGAGGAAACGAGGAGTGAGACTAGTTCGGAGCTGGTTGAGCCCATGAATTCCAAGGCCAAGGATGATGAAGACAAGAGAAAGAAGAAGAAAGTCAAGGTTGATTTTGAAACCAATAAAGTGGAAGAGGAAGAGGTTGCGAGGGCTGATGATCCTAATGCTGTTAACAATTTTAGGATATCGGAGCCATTAAGGAATCAGCTGAAGGACAAGGGGATCGAGTCTCTGTTTCCGATTCAAGCAATGACTTTTGATATTATCCTTGATGGGACTGATTTGGTTGGTAGAGCACGCACGGGTCAGGGAAAAACGCTGGCATTTGTGCTGCCTATATTGGAGTCCTTGACAAATGGTCCCACAAAATCTTCAAGAAAGACTGGATATGGAAGAGCTCCCAGCGTTCTTGTCCTTTTACCTACAAGAGAGTTGGCTAATCAGGTGCATTCTGACTTCAAAGTATATGGTGGAGCATTGGGATTGAATTCTTGCTGTTTGTATGGTGGAGCTCCATATCATTCTCAAGAAACTGCACTCAAGAGAGGGGTTGATATTGTTATTGGAACACCTGGTCGTATAAAGGATCATATTGAGAGGGGAAATATTGACCTGAGCTATTTGAAGTTCAGAGTCCTTGATGAGGCTGATGAAATGTTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTTGGGAAGGTGGAGGATGTAAATAAGGTCCAGACACTTCTTTTCAGTGCCACTTTACCAGATTGGGTTAAGCAGATTTCAACTAAGTTTCTGAAACGCGATAAGAAAACTGTGGACCTTGTTGGTAACCAAAAAATGAAGGCAAGCGTCAATGTTAGGCACATTGTTCTTCCTTGTACAAGTAATGCAAGATCACAGCTCATTCCAGACATAATTCGATGCTATAGCAGTGGAGGCCGAACGATTATATTCACCGAGACAAAAGAGTCTGCATCTGAGCTTGCAGGCTTGTTGCCTGGAGCTCGTGCCCTACATGGTGACATACAACAGTCACAACGAGAGGTCACATTGTCTGGTTTCAGGAATGGGAAGTTTATGACTCTAGTCGCTACTAATGTGGCTGCAAGGGGATTGGACATCAATGATGTTCAATTAATTATTCAGTGTGAACCTCCACGCGATGTAGAAGCCTATATTCATCGTTCTGGACGCACTGGAAGGGCAGGTAATACTGGAGTTGCCGTCATGCTTTACGATCCAAGGAGATCTAACGTATCTAAGATAGAAAGAGAATCTGGAGTTAAATTTGAGCATATATCAGCTCCTCAGCCTGATGATATTGCGAAAGCTATTGGTGGTGAAGCTGCAGAGATGATAAGCCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCTGCTGCTGAGGAGCTACTGAGCAACTCCAAATTGTCTGCAGTTGAGTTACTTGCAAAAGCTCTTGCAAAGGCTGTTGGTTATACTGAGGTCAAGAAAAGATCACTTCTGACTTCAATGGAGAATCATGTTACTTTACTTCTTCAGACTGGAAGGCCGATATACTCCCCATCTTATGCTTATGGAGTCCTAAGGAGATTTTTGCCGGAGGAGAAAGTTGAGTCAGTGAAAGGCCTGACTCTTGCTGCTGATGGAAATGGTGTTGTCTTTGATGTTTTGGCCCACGATTTGGATACATTTCTTGCTGGCCAGGAAAACGCAGCTAATGTAAGCTTAGAAGTACTACAATCTTTACCACGGTTGCAAGAGAGAGAAGAGTCAAAAGGAAGATTTGGTGGTGGGAGAGGTGGGTTTGGCAATAGAAGTGGTGGACGAGGATTTTCCGGTGGAAGAGGAGGAAGAGGGGGCAGGGGTGGTAGGTTTTCAAGTGGCCGAGGTGGTGGCAACAAAGGGCAGAGATGGTAA 2076 0.4408 MPSLPIVDARMIETVNEKKDKKKKMKQEEASAEKKVKKKLKEKESGKKRKALEYDGEEEETRSETSSELVEPMNSKAKDDEDKRKKKKVKVDFETNKVEEEEVARADDPNAVNNFRISEPLRNQLKDKGIESLFPIQAMTFDIILDGTDLVGRARTGQGKTLAFVLPILESLTNGPTKSSRKTGYGRAPSVLVLLPTRELANQVHSDFKVYGGALGLNSCCLYGGAPYHSQETALKRGVDIVIGTPGRIKDHIERGNIDLSYLKFRVLDEADEMLRMGFVEDVELILGKVEDVNKVQTLLFSATLPDWVKQISTKFLKRDKKTVDLVGNQKMKASVNVRHIVLPCTSNARSQLIPDIIRCYSSGGRTIIFTETKESASELAGLLPGARALHGDIQQSQREVTLSGFRNGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSKIERESGVKFEHISAPQPDDIAKAIGGEAAEMISQVSDSVIPAFKSAAEELLSNSKLSAVELLAKALAKAVGYTEVKKRSLLTSMENHVTLLLQTGRPIYSPSYAYGVLRRFLPEEKVESVKGLTLAADGNGVVFDVLAHDLDTFLAGQENAANVSLEVLQSLPRLQEREESKGRFGGGRGGFGNRSGGRGFSGGRGGRGGRGGRFSSGRGGGNKGQRW* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00197 691 Gene3D - 60 325 IPR027417 -
Pte16g00197 691 MobiDBLite consensus disorder prediction 73 89 - -
Pte16g00197 691 CDD GUCT_RH7_like 551 636 - -
Pte16g00197 691 CDD SF2_C_DEAD 338 464 - -
Pte16g00197 691 FunFam DEAD-box ATP-dependent RNA helicase 7 561 633 - -
Pte16g00197 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 494 IPR001650 -
Pte16g00197 691 MobiDBLite consensus disorder prediction 12 57 - -
Pte16g00197 691 Pfam Helicase conserved C-terminal domain 357 455 IPR001650 -
Pte16g00197 691 Pfam GUCT (NUC152) domain 544 639 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pte16g00197 691 CDD DEADc 121 319 - -
Pte16g00197 691 SUPERFAMILY RNA-binding domain, RBD 549 631 IPR035979 GO:0003676
Pte16g00197 691 Pfam DEAD/DEAH box helicase 134 311 IPR011545 GO:0003676|GO:0005524
Pte16g00197 691 Gene3D - 332 562 IPR027417 -
Pte16g00197 691 MobiDBLite consensus disorder prediction 641 691 - -
Pte16g00197 691 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 26 667 - -
Pte16g00197 691 SMART ultradead3 129 341 IPR014001 -
Pte16g00197 691 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Pte16g00197 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 467 IPR027417 -
Pte16g00197 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 290 IPR027417 -
Pte16g00197 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 323 IPR014001 -
Pte16g00197 691 Gene3D - 563 633 - -
Pte16g00197 691 MobiDBLite consensus disorder prediction 1 89 - -
Pte16g00197 691 Coils Coil 15 43 - -
Pte16g00197 691 SMART helicmild6 378 455 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00197 Pte-Chr16 2324888 2329981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00197 147 461 Eukaryotic Initiation Factors Gene Family AT1G72730 31.498 8.45e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00197 K16911 - qsa:O6P43_008295 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00197 16 2324888 2329981 Pte16g00197 16 2324888 2329981 RCT