Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00186 ATGGCAAAAGGAAGTAAAATATCAGGACCATCTCCCTCTAGCCCTGCTAGCTTCAAGATAGTTGCACTTTTCTCAAAGAAGAAGCATGCAGCTCCAAATTCAAAGCCAGCAAGCGTATCCCCATTCAATGAAGAACATGCAAAGTGGTATTGTCCAGATAGAAGAATTTATTTGCCATCTGGGCTCTTGGACCCATCTAAAATACCAGAGTACTTAACTGGAGAAAATATGAGCTTATTAGTGAATGTGGATTCCTGCATATATGGCTATGATCCATTTGGTCTTGGCAAGAAACTAGAAGACTTCAGCAAATACCTGGCAAATGAGTTGATCCACGCCCGTTGGGCCATGCTTGGTGCAGCTGGGCTCATAATTCCAAAAGCACATATGACAACTGAGCTAAAAAAGTGTTTGTACTGGAGCACTGCTGTTGAAGGAAATACATTGAATTATTTTGGGAAGAAAAACCCCATCAACCTTATTGTCGCTGTGATTGCTGAGGTTGTATTTGTTGGTGGTGCAGAGTATTACAGAATCATCGATGGACTGGTATATGACAATTGA 564 0.4131 MAKGSKISGPSPSSPASFKIVALFSKKKHAAPNSKPASVSPFNEEHAKWYCPDRRIYLPSGLLDPSKIPEYLTGENMSLLVNVDSCIYGYDPFGLGKKLEDFSKYLANELIHARWAMLGAAGLIIPKAHMTTELKKCLYWSTAVEGNTLNYFGKKNPINLIVAVIAEVVFVGGAEYYRIIDGLVYDN* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00186 187 SUPERFAMILY Chlorophyll a-b binding protein 51 182 - -
Pte16g00186 187 Gene3D Chlorophyll a/b binding protein domain 56 187 - -
Pte16g00186 187 Pfam Chlorophyll A-B binding protein 88 179 IPR022796 -
Pte16g00186 187 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 18 180 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00186 Pte-Chr16 2166197 2172020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00186 17 187 Chloroplast and Mitochondria Gene Families AT4G10340 58.757 1.79e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00186 K08916 - cpap:110818730 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00186 16 2166197 2172020 Pte16g00186 16 2166197 2172020 RCT