Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00180 ATGCTCCTGTCTAGCTGTTCTGTAGTTTGTAAATGTGGCAGTGCATGCATAAACAAACCATTTCAGCAACGGCCAGTTAAAAAGATGAAATTGGTACAGACTGAGAAATGTGGATCTGGAATTGTTGCGGATGAAGACATCAAGCAAGGAGAATTTGTAATAGAGTATGTTGGAGAAGTTATTGATGATAAAACTTGCGAGGAAAGACTTTGGAAAATGAAACATCGTGGGGAGACAAACTTTTACCTGTGCGAGATCAACCGAGATATGGTCATTGATGCCACTTACAAGGGGAACAAGTCGAGATATATAAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACTAGAATTGGCATCTTTGCAACTCGCGACATTAAAAAGGGGGAGCACCTGACTTATGATTATCAGTTTGTGCAATTTGGTGCCGATCAAGATTGCCACTGTGGAGCTGTTGGTTGCAGGCGTAAGCTGGGTGTCAAACCCACCAAACCTAAAATGTCTTCTGATACTGCACTGAAACTAGTAGCTTACCAGGTTTATCAGAATGGACGCCTGCCTGAAGGAAGTTCTGGTGCACTTAGCCAACAGAAGTGCTCCCGTAATTGCATCGGTGAAATTATCAAAATTAATCAGCCTATGACTGGGAGGCGTTTCGGAATCATCAAAAGGTTTGATAGATACTCCAGAAAACACTCGATTATGTTTGATGATGGTGGCGTTGAATTTCTGGACATATCAAAAGAAGATTGGGAGCTCATCAGTTTGTAA 792 0.4154 MLLSSCSVVCKCGSACINKPFQQRPVKKMKLVQTEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEERLWKMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGEHLTYDYQFVQFGADQDCHCGAVGCRRKLGVKPTKPKMSSDTALKLVAYQVYQNGRLPEGSSGALSQQKCSRNCIGEIIKINQPMTGRRFGIIKRFDRYSRKHSIMFDDGGVEFLDISKEDWELISL* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00180 263 Gene3D SET domain 1 182 IPR046341 -
Pte16g00180 263 SMART PostSET_3 150 166 IPR003616 -
Pte16g00180 263 SMART set_7 27 150 IPR001214 GO:0005515
Pte16g00180 263 ProSiteProfiles SET domain profile. 27 144 IPR001214 GO:0005515
Pte16g00180 263 ProSiteProfiles Post-SET domain profile. 150 166 IPR003616 -
Pte16g00180 263 CDD SET_ASHR3-like 28 166 - -
Pte16g00180 263 Pfam SET domain 38 143 IPR001214 GO:0005515
Pte16g00180 263 ProSiteProfiles AWS domain profile. 1 25 IPR006560 GO:0005634|GO:0042054
Pte16g00180 263 PANTHER SET DOMAIN PROTEINS 1 186 - -
Pte16g00180 263 SUPERFAMILY SET domain 3 162 IPR046341 -
Pte16g00180 263 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 5 205 IPR025787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00180 Pte-Chr16 2114782 2120997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00180 6 162 C2H2 Transcription Factor Family AT2G23740 34.463 1.22e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte16g00180 SET 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00180 - - jre:109005024 473.781