Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00174 ATGGCAGACCTGTATGAGCTTGCCAACGCTATGATATTGTCAATCACAGACTATGATATGGAGGTGACGTATGATCTGGACATGGCTATGGTTAATTCTGTAGATGAATCATTCAGAAAGGCCACTGCATCAAGTTCCTTTGTATCCAACTTACCTGTTGTATCAACAAGCTTTGATACAGATGATGTTTGCTCCGTTTGTATGGACAGCTTTAACTTGCAGAGAGGCACTGTGATGAGCACTGAAGAAGAGAAAGTTAAGCAACTACCGTGTGGGCATATGTTCCATGCCAACTGCATCAGCACATGGCTTTCACGTCGTAATTCTTGCCCTCTCTGCCGTTGCAAAATTCTGGAGGACTCATAA 366 0.4344 MADLYELANAMILSITDYDMEVTYDLDMAMVNSVDESFRKATASSSFVSNLPVVSTSFDTDDVCSVCMDSFNLQRGTVMSTEEEKVKQLPCGHMFHANCISTWLSRRNSCPLCRCKILEDS* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00174 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 119 IPR013083 -
Pte16g00174 121 Pfam RING-H2 zinc finger domain 62 114 IPR024766 GO:0008270
Pte16g00174 121 CDD RING-H2_PA-TM-RING 63 114 - -
Pte16g00174 121 ProSiteProfiles Zinc finger RING-type profile. 64 114 IPR001841 -
Pte16g00174 121 PANTHER SI:CH211-59O9.10 26 119 - -
Pte16g00174 121 SUPERFAMILY RING/U-box 57 119 - -
Pte16g00174 121 SMART ring_2 64 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00174 Pte-Chr16 2051215 2052629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00174 15 120 C3H Transcription Factor Family AT5G01980 39.091 7.57e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00174 - K22378 qsa:O6P43_023090 100.908