Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00173 ATGGCTACAAGACTTAAGTTTGAGAATTCTTGTGAAATTGGTGTTTTCTCAAAACTCACCAATGCTTATTGCTTGGTTGCCATTGGAGGTTCAGAGAACTTCTACAGTTTATTTGAGTCTGAGTTAACAGATGTTATACCTGTGGTTAAAACATCTATTGGCGGCACTCGTATTATTGGGCGCCTTTGTTGTGGGAACAAGAATGGCCTTCTTGTGCCACACACCACTACTGACCAAGAACTTCAGCACCTAAAAAACAGTCTCCCTGATCAAGTTGTTGTTCAGCGGGTAGATGAAAGGCTATCAGCTCTTGGAAATTGTATTGCTTGTAATGATCATGTTGCTCTCACCCATACGGATCTTGATAAGGATACTGAAGAAATGATAGCAGATGTACTTGGTGTAGAAGTGTTCAGGCAGACTATTGCTGGCAATATTCTTGTTGGTAGTTTTTGTGCCTTATCCAACAGAGGTGGCTTGGTGCACCCTCATACGTCTATTGAGGATTTGGATGAGCTATCCACACTTCTTCAGGTCCCCCTTGTAGCTGGAACAGTTAATCGTGGAAGTGAAGTGATAGCTGCTGGGATGACAGTGAATGATTGGACAGCATTCTGTGGATCAGACACTACTGCAACCGAACTCTCAGTCATTGAGAGTGTGTTCAAGTTGAGGGATGCACCTATTGCAACTGAAATGAGGAAATCTTTGATCGATACTTACATTTAA 729 0.4225 MATRLKFENSCEIGVFSKLTNAYCLVAIGGSENFYSLFESELTDVIPVVKTSIGGTRIIGRLCCGNKNGLLVPHTTTDQELQHLKNSLPDQVVVQRVDERLSALGNCIACNDHVALTHTDLDKDTEEMIADVLGVEVFRQTIAGNILVGSFCALSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLRDAPIATEMRKSLIDTYI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00173 242 Hamap Translation initiation factor 6 [eif6]. 1 242 IPR002769 GO:0042256|GO:0043022
Pte16g00173 242 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Pte16g00173 242 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Pte16g00173 242 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Pte16g00173 242 SUPERFAMILY Pentein 1 224 - -
Pte16g00173 242 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 241 IPR002769 GO:0042256|GO:0043022
Pte16g00173 242 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Pte16g00173 242 Gene3D - 1 225 - -
Pte16g00173 242 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Pte16g00173 242 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00173 Pte-Chr16 2047151 2049989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00173 1 243 Eukaryotic Initiation Factors Gene Family AT3G55620 88.211 1.09e-164 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00173 K03264 - ming:122066887 446.432