Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00168 ATGTGCGTTCCTGCGGCCCTTGTTTTCTTTTATGTTCAAATTGTATTCTCCTGTTGCTCTTTCACAAGCATAGAGTACGGAATTAGCAAATCACAAAAAGCAAGACAAGGTTTGGAGCTGCCATTTGCGTTCGGATTGGCTACCATGAATGAGAAAGCATCTGTGTCCAAAGAGCTCAATGCTAGGCATGCCAAGATTCTAGAGGGTCTTGTTAAGCTGCCAGATAATCGGGAGTGTGCTGATTGTCGAAGCAAGGCTCCAAGATGGGCAAGTGTCAACCTTGGAATATTTATCTGTATGCAATGTTCAGGAATCCACAGGAGTCTTGGAGTTCATGTATCAAAGGTGCGTTCAACCACACTTGATACCTGGCTTCCAGAACAAGTTGCTTTTATGCATGCTATGGGTAATCAAAAGTCAAACAATCACTGGGAAGCAAAACTGCCCGATGATTTTGACAGAGTTGGATCTGGACTTGAGAAGTTCATTCGTGCCAAGTATGTAGAGAAAAGATGGGTTGCTAATGGTGCACTACCACGCACTCCTACTTCAGGGGAATTGCATAGTATTGTAAAGAAGTTATCTGATACGGGACCTAAGAGTGGTGTTCCGAGGGGTTCAAGAAGGCTTTCTCTTGAGGAAAGTATACTAACAAAGCATATGGCAGATGTTATCTATCCAGTAACAAGATCTCGAGGGGGTTCTTTTGATATGCAGACCAAGAGTACTTCGCACCAAGTACATGGTCCTCTTCCTATGGATTTCAGTAATTCCAAAAGGAAGGGTAATGATACCGCAGAAGTTCTGAATTTGTTTTCTGGCCAGGAGAAGATCCCGGCTTGCGGAATTGCACCTCCGTCACTCTGGACAACTTTTGACTGTAAGGATAACGAGAAGATCCCGGCTTGCGGAATTGCACCTCCGTCACTTTGGACAACTTTTGACTGTAAGGATAACGTGAGAAGTCTTCCAGTCTTTATGAGTTCTTCTACTTGA 996 0.4388 MCVPAALVFFYVQIVFSCCSFTSIEYGISKSQKARQGLELPFAFGLATMNEKASVSKELNARHAKILEGLVKLPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHVSKVRSTTLDTWLPEQVAFMHAMGNQKSNNHWEAKLPDDFDRVGSGLEKFIRAKYVEKRWVANGALPRTPTSGELHSIVKKLSDTGPKSGVPRGSRRLSLEESILTKHMADVIYPVTRSRGGSFDMQTKSTSHQVHGPLPMDFSNSKRKGNDTAEVLNLFSGQEKIPACGIAPPSLWTTFDCKDNEKIPACGIAPPSLWTTFDCKDNVRSLPVFMSSST* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00168 331 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 49 250 IPR044520 GO:0005096
Pte16g00168 331 SUPERFAMILY ArfGap/RecO-like zinc finger 63 174 IPR037278 -
Pte16g00168 331 ProSiteProfiles ARF GTPase-activating proteins domain profile. 64 173 IPR001164 GO:0005096
Pte16g00168 331 Gene3D Arf GTPase activating protein 46 177 IPR038508 -
Pte16g00168 331 MobiDBLite consensus disorder prediction 235 251 - -
Pte16g00168 331 FunFam stromal membrane-associated protein 1 isoform X1 49 177 - -
Pte16g00168 331 SMART arf_gap_3 64 182 IPR001164 GO:0005096
Pte16g00168 331 CDD ArfGap 67 167 - -
Pte16g00168 331 Pfam Putative GTPase activating protein for Arf 65 174 IPR001164 GO:0005096
Pte16g00168 331 PRINTS HIV Rev interacting protein signature 116 137 IPR001164 GO:0005096
Pte16g00168 331 PRINTS HIV Rev interacting protein signature 76 95 IPR001164 GO:0005096
Pte16g00168 331 PRINTS HIV Rev interacting protein signature 95 112 IPR001164 GO:0005096
Pte16g00168 331 MobiDBLite consensus disorder prediction 235 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00168 Pte-Chr16 2010214 2013723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00168 67 167 C2H2 Transcription Factor Family AT4G05330 48.598 2.10e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00168 K12486 - qsa:O6P43_008405 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00168 16 2010214 2013723 Pte16g00168 16 2010214 2013723 RCT