Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00159 ATGGCGCCCGTGGGATTACCTCCTGGTTTTAGGTTCCATCCCACTGACAATGAGCTAGTGAATTACTACCTTAAGAGAAAAATCAATGGCCAAGAGATTGAACTTGACATCATTCTTGAAGTTGATCTCTACAAATGTGAACCATGGGAATTAGCAGAAAAGTCATTTCTGCCAAGTAGAGACCAAGAATGGTACTTTTTTGGACCAAGGGATAGGAAGTATCCCAATGGGTTCACAAAAAATAGAGCAACAAGAGCAGGATACTGGAAATCTACAGGAAAAGACAGAAGGGTTACAAGCCAAAACAGACCCATTGGAATGAAGAAGACTTTGGTTTATTACAGAGGTCGTGCTCCTCAGGGCATTAGAACTGATTGGGTAATGCATGAGTACAGATTTGATGACAAAGAATGTGAGGACACCTCAGGAATTCAGGATACTTATGCATTGTGTCGAGTGTTTAAGAAAAATGGAATCTGCTCTGAGATTGAAGAATTGGGGTAA 504 0.4087 MAPVGLPPGFRFHPTDNELVNYYLKRKINGQEIELDIILEVDLYKCEPWELAEKSFLPSRDQEWYFFGPRDRKYPNGFTKNRATRAGYWKSTGKDRRVTSQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRFDDKECEDTSGIQDTYALCRVFKKNGICSEIEELG* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00159 167 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Pte16g00159 167 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Pte16g00159 167 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Pte16g00159 167 FunFam Nac domain-containing protein 86 15 159 - -
Pte16g00159 167 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Pte16g00159 167 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00159 Pte-Chr16 1898557 1900428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00159 1 164 NAC Transcription Factor Family AT3G17730 89.024 2.51e-111 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte16g00159 NAM 3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00159 - - qsu:112012632 336.65