Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00156 ATGCAGTCGGACTCTGAAATCGCTGAAATGGGTGTTGAAGATCAAAACGACGGAAAATGGTCTAAGGCGTCTGCTACAGCTTGCATTAGGCATTTCAATGGTGATACACCATCCAAGAATTTTGTCCAGTCCACGGATACAAATTCCATCGGCAGTGTCCAGATGGCCAAGGTGAGAAAGCCCTACACAATTACTAAGCAAAGGGAAAAATGGACCGAGGAAGAGCATCAGAAGTTTCTTGAAGCCTTGAAATTGTACGGCCGTGGTTGGCGTCAAATAGAAGGTAAGCACATTTTTTAG 300 0.4467 MQSDSEIAEMGVEDQNDGKWSKASATACIRHFNGDTPSKNFVQSTDTNSIGSVQMAKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEGKHIF* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00156 99 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 93 IPR006447 GO:0003677
Pte16g00156 99 Gene3D - 70 98 - -
Pte16g00156 99 SUPERFAMILY Homeodomain-like 57 94 IPR009057 -
Pte16g00156 99 MobiDBLite consensus disorder prediction 1 20 - -
Pte16g00156 99 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 99 IPR017930 -
Pte16g00156 99 CDD SANT 70 93 IPR001005 -
Pte16g00156 99 PANTHER SWI/SNF COMPLEX-RELATED 44 94 - -
Pte16g00156 99 Pfam Myb-like DNA-binding domain 68 93 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00156 Pte-Chr16 1878999 1880089 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte16g00156 Myb_DNA-binding 6.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00156 - - pmum:103338885 103.219