Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00153 ATGTGCACTAGAGGCCACTGGAGGCCAGCTGAAGATGAAAAACTTCGGGAGTTGGTGGAACGCTACGGACCTCATAACTGGAACGCCATAGCTGACAAGCTTCGAGGAAGATCAGGGAAGAGTTGTAGGTTAAGATGGTTTAATCAATTGGACCCAAGAATAAACAGAAATCCGTTCACAGAGGACGAAGAAGCTCGTCTTTTAGCTTCTCACAGGATTCATGGCAATAGGTGGTCAGTTATCGCAAGGCTTTTCCCAGGGAGAACTGATAATGCTGTTAAGAATCACTGGCATGTTACGATGGCAAGGCTACGCCGAGAACGGTCAAAGCTTTATGCTAAACGGATTGCTCAAACGAAATTATCTCATCAACTACAACTACACCAAGATGATCCGATAAATCATGATATGAATAAGTTCAGAAACCATGCCGCTTCCTCTTTTGTTCAGATACGCTACGAAGGTTATAATTTTCACCCAGCAGAGCACGGCACTTTCCAATTTGACAAACGAACTTGTAACCAAGTCCCAAGCTCTTCTTCCACAATGCATGAAGATAAAAGCCAGTTGAAAGAGTTTTATGATTTTCTTCAAGTAAATACAGAGTCAAGTAGGAGTGAACTGACAGATAGTGCAAAAAGAGATGATGAAGAGGTTGATCAGGAAGCTACGGAACAAAACCGTAAGGCTAGTGTTACATTCATAGATTTTTTGTCTCTTGGAACCTCTTAG 732 0.4235 MCTRGHWRPAEDEKLRELVERYGPHNWNAIADKLRGRSGKSCRLRWFNQLDPRINRNPFTEDEEARLLASHRIHGNRWSVIARLFPGRTDNAVKNHWHVTMARLRRERSKLYAKRIAQTKLSHQLQLHQDDPINHDMNKFRNHAASSFVQIRYEGYNFHPAEHGTFQFDKRTCNQVPSSSSTMHEDKSQLKEFYDFLQVNTESSRSELTDSAKRDDEEVDQEATEQNRKASVTFIDFLSLGTS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00153 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Pte16g00153 243 ProSiteProfiles Myb-like domain profile. 4 50 IPR001005 -
Pte16g00153 243 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Pte16g00153 243 Gene3D - 57 131 - -
Pte16g00153 243 MobiDBLite consensus disorder prediction 203 227 - -
Pte16g00153 243 Gene3D - 4 55 - -
Pte16g00153 243 MobiDBLite consensus disorder prediction 207 225 - -
Pte16g00153 243 CDD SANT 58 98 IPR001005 -
Pte16g00153 243 FunFam MYB transcription factor 4 55 - -
Pte16g00153 243 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Pte16g00153 243 PANTHER MYB PROTEIN-RELATED 4 192 - -
Pte16g00153 243 CDD SANT 7 48 IPR001005 -
Pte16g00153 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Pte16g00153 243 SMART sant 55 103 IPR001005 -
Pte16g00153 243 SMART sant 3 52 IPR001005 -
Pte16g00153 243 Pfam Myb-like DNA-binding domain 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00153 Pte-Chr16 1825073 1826553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00153 1 243 MYB Transcription Factor Family AT1G17950 56.078 6.18e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g00153 Myb_DNA-bind_6 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00153 K09422 - qsa:O6P43_005257 330.487