Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00148 ATGTTAGGCAATAATTCTCCCTCGTCATCAGTTCCTACTTCTGAGCCATTTTCTACCGTAGACAATGGTACTAATGCAAACAAAAGAAAACGAAGGCCTGCAGGAACTCCAGATCCAGATGCTGAGGTGGTGTCTCTTTCACCCAAGACGCTATTAGAATCAGATCGGTATGTGTGTGAGATATGCAACCAAGGATTTCAAAGGGACCAAAACCTTCAGATGCATAGGCGAAGACACAAGGTGCCATGGAAGTTACTCAAGAGGGAGACACCAACGGTGAGGAAGCGTGTGTTTGTGTGTCCAGAGCCAGCGTGCTTGCACCACGATCCCTGTCATGCCCTTGGTGACCTTGTTGGGATTAAGAAGCATTTTAGAAGGAAACACAGCAATCACAAGCAATGGGTTTGCGAGAAATGTTCCAAAGGGTATGCTGTTCAGTCAGATTACAAAGCTCATCTTAAAACTTGTGGCACCAGGGGACATTCTTGTGATTGTGGCCGAGTCTTCTCAAGGGTAGAGAGTTTCATTGAGCACCAAGATGCTTGTAGCATGGGGCGTCTCCTGTCAGATCAATCACAGCCGTTGCAGTCAGCAGCATGTTTATCAAGAACAGCTTCAAGTCCAAGCCCTTCGAGTGACACAAATTTCAGCACAGCTCTTTGGCCTACAGCTACTTTGACAATGTCAAAGACTAAGCCAACTAAAACCTCATTCTTGAACCCCAAGCCAGCTATTGCTGCTAAAGTTGCTGTGGCTGAAAATTCGGTCAAGAATAACAATAAAACCTACCACAACTTGGAACTCAAGCTTTCTACCTCCACATCCAATCCCATTGATATTACATCATCACCCAAAAGAGAGGACAATCACACTACCCAGTTGCAGTTTTCAATTGGATCATCCGAGTGTGTAGAGAAAATTGAATCAAACAGTGTTCATGTCAGCAACAAGAACTCACCCAAAGAAAGCAGCTGTAACAATATTATCGTCGATAGTGACAAACCAAACGGTCTTGTGGCATTGAGGATACACGAGCAAGCACGTGACCAGCTAAGGCTAGCTATGGTAGAAAAGGCCTATGCTGATGAAGCAAGACAAGAAGCTAAAAGGCAGATTGAATTAGCTGAGCATGAGTTTTCAAACGCAAAGAGGATAAGGCAACAAGCACAAGCTGAACTAGACAAAGCTTATGCACTGAAAGAGCATGCAATCAAGCAGATGAACTCTACTCTACTTCAAATCACTTGTCACGCTTGCAAGCAGCAGTTTCAGGAACCGATCACTAACAATGGCCAGTGCTCATCATGA 1308 0.4457 MLGNNSPSSSVPTSEPFSTVDNGTNANKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPTVRKRVFVCPEPACLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSMGRLLSDQSQPLQSAACLSRTASSPSPSSDTNFSTALWPTATLTMSKTKPTKTSFLNPKPAIAAKVAVAENSVKNNNKTYHNLELKLSTSTSNPIDITSSPKREDNHTTQLQFSIGSSECVEKIESNSVHVSNKNSPKESSCNNIIVDSDKPNGLVALRIHEQARDQLRLAMVEKAYADEARQEAKRQIELAEHEFSNAKRIRQQAQAELDKAYALKEHAIKQMNSTLLQITCHACKQQFQEPITNNGQCSS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00148 435 Coils Coil 358 406 - -
Pte16g00148 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Pte16g00148 435 Gene3D Classic Zinc Finger 35 98 - -
Pte16g00148 435 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Pte16g00148 435 FunFam protein indeterminate-domain 12-like 36 104 - -
Pte16g00148 435 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Pte16g00148 435 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 407 IPR031140 -
Pte16g00148 435 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Pte16g00148 435 Gene3D Classic Zinc Finger 119 197 - -
Pte16g00148 435 MobiDBLite consensus disorder prediction 1 44 - -
Pte16g00148 435 SMART c2h2final6 134 161 IPR013087 -
Pte16g00148 435 SMART c2h2final6 98 128 IPR013087 -
Pte16g00148 435 SMART c2h2final6 57 79 IPR013087 -
Pte16g00148 435 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00148 Pte-Chr16 1736547 1738731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00148 5 435 C2H2 Transcription Factor Family AT1G25250 51.732 5.93e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte16g00148 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00148 K25871 - qsu:112038406 623.624