Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00143 ATGCCCCAGAACAAGATTTTCAGTTCTGATCCCTCGTCGAATCCGATTCCTGACCTTTCATTGCACATAAGTCCTCCAAACAGTGCTCCTTCTTCACTTTGTACTGGTACAAATGATGGTGAAGGTGATTCCTTTTTCGACATATGGCGGAGTACGGAGGTTAATGCCTTCAAGTCTCACAGTGATAGTTCCATACAAGGAAACAACCTAATAGATCACACAGAGCTATCTCTGGTTAATCCATTAACAGCAGCAGCTGCCTCAGAAGCTGAGAGCCCATGGAGAAGAAATTTTGTGAAAAGGTGTGCTGCTACTACTGATGAAGCTCAGCTAGCAAGGCAAATCAGTTATGGGATTTCAAGCCCCATTAAAGGAATCCCAGTATATAACAACACATTTCCCTTTCCAACAATGGAGGAGAAGGATCCCAAGTTGTGCTTGTACTCACTCCGTTCTCAACCTAATGGCTTAAGAAACTATTCATCAGGCTCTTACAGAGGTTGTGGTAACGTGGGTGTCATGGAACCAGCGATGTTGAGGGGGTTTAGTGGCGTAAACAACGAAAGTTCAAGGGCACAGCAGTGTCGGTACTATTTGCAACAGCAGCAAGGTCAGTATGGATTCGGAGGTACTTCTGATAATGGATATTTCAGATCAAGATTTATATCAAGGCTGCAGGGAAAGAAGAACGTGAGAGCCCCGAGAATGCGATGGACTAGTTCTCTCCATGCTCGATTTATTCATGCGGTTGAGCTCCTAGGCGGCCATGAAAGGGCTACTCCAAAGTCCGTGATGGAGCTCATGGATGTCAAAGATCTTACGCTGGCTCATGTCAAGAGTCATTTGCAGATGTATAGAACTGTTAAGAACACTGACAAACCTGCAGCTTCCTCAGATGGACCTGGAGATGAAGAATTCTTGAGTGTCACAGCACGACGGCATAATCAAACTGAAAACCGTTCATCTTTTCAAAGAGGACCTTCAACTACAACTTTGGAAAAGGAGATAGGGTACCCTTCTAGCAATCTCTGGGGAAATTCTTCCAGTAGAGGAGACTGGGAAGTTGGATCCAGAGACTATATGGATGGTCTAAGATCAGAACAAATTGCATCTTCTCAGCAAAGAAAGGAAAGTAATTTTGCACCACCGAATGGTTATACCCGGCCAGTTGTTGATTCCAGTAATCCAAGCTTGGAGTTTACATTAGGAAGATCAAACAGTTGGTACATCAAAGGACTTGACTAA 1245 0.4418 MPQNKIFSSDPSSNPIPDLSLHISPPNSAPSSLCTGTNDGEGDSFFDIWRSTEVNAFKSHSDSSIQGNNLIDHTELSLVNPLTAAAASEAESPWRRNFVKRCAATTDEAQLARQISYGISSPIKGIPVYNNTFPFPTMEEKDPKLCLYSLRSQPNGLRNYSSGSYRGCGNVGVMEPAMLRGFSGVNNESSRAQQCRYYLQQQQGQYGFGGTSDNGYFRSRFISRLQGKKNVRAPRMRWTSSLHARFIHAVELLGGHERATPKSVMELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGPGDEEFLSVTARRHNQTENRSSFQRGPSTTTLEKEIGYPSSNLWGNSSSRGDWEVGSRDYMDGLRSEQIASSQQRKESNFAPPNGYTRPVVDSSNPSLEFTLGRSNSWYIKGLD* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00143 414 Gene3D - 233 290 - -
Pte16g00143 414 MobiDBLite consensus disorder prediction 367 381 - -
Pte16g00143 414 MobiDBLite consensus disorder prediction 1 36 - -
Pte16g00143 414 NCBIfam myb-like DNA-binding domain, SHAQKYF class 234 287 IPR006447 GO:0003677
Pte16g00143 414 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 17 408 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pte16g00143 414 MobiDBLite consensus disorder prediction 367 394 - -
Pte16g00143 414 FunFam Myb family transcription factor 232 290 - -
Pte16g00143 414 MobiDBLite consensus disorder prediction 312 349 - -
Pte16g00143 414 SUPERFAMILY Homeodomain-like 231 288 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00143 Pte-Chr16 1615526 1620466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00143 16 411 G2-like Transcription Factor Family AT5G16560 36.468 1.47e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte16g00143 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00143 - - qsa:O6P43_008449 382.874