Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00140 ATGGTGTTAGGCTGGAGAAAGAGGAAGAAAAATAGTAGAGATCATGGAGTTAAACTCCAGTTGGAGATTGTCATACCAAACCACTTCAGGTGTCCAATATCTCTTGATCTTATGAAAGATCCTGTGACATTGACGACCGGGATAACTTATGATCGAGAAAGCATCGAGAGGTGGTTCGAGGACGGGAACTACACGTGCCCGGCTACGAATCAGATCGTTAAGAACTTTGATCGAATTCCTAACCATACCCTTCGGATAATGATTCAAAACTGGAGTGTGCAGAATCAGCAATATGGGGTTGAGAGAATACCGACACCAAGGATTCCAGTCTCCTCATTAGAAGTGAATGAGGTACTTGAACGCGTGAAGGCCTCAGCTAGAAGAACTCATCAACATAGATGCTTGGAGTTGGTTCGAGAAATCGAGAGAATGGCTGCTGAGAGTGAGAGAAACAAGAGTTGTGTGGTAGAGAACGGAGCAGCTGCGGCGTTGGCTGCTGCATTTCATGCATTTGCAGTTGATTCTGTTGAGAGGAATGA 539 0.4508 MVLGWRKRKKNSRDHGVKLQLEIVIPNHFRCPISLDLMKDPVTLTTGITYDRESIERWFEDGNYTCPATNQIVKNFDRIPNHTLRIMIQNWSVQNQQYGVERIPTPRIPVSSLEVNEVLERVKASARRTHQHRCLELVREIERMAAESERNKSCVVENGAAAALAAAFHAFAVDSVERN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00140 179 SUPERFAMILY RING/U-box 24 101 - -
Pte16g00140 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 98 IPR013083 -
Pte16g00140 179 CDD RING-Ubox_PUB 26 77 IPR045210 -
Pte16g00140 179 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Pte16g00140 179 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Pte16g00140 179 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Pte16g00140 179 PANTHER WDSAM1 PROTEIN 22 174 IPR045185 GO:0061630
Pte16g00140 179 FunFam RING-type E3 ubiquitin transferase 25 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00140 Pte-Chr16 1530452 1531049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00140 22 174 U-box Gene Family AT5G37490 47.712 1.98e-51 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00140 - - qsa:O6P43_005232 260.381