Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00139 ATGATAAGGAGAAGAGGAGGGGAAGAAAGTGGTGAATCAGATGAAGTTATGTCAGTAGAAGACCATGTAGAGAGAGAACTGAAGAGAGAAGATTCAACAAGAAGAACACCATGGAGTAGAATCTCAAAGTGTTTCAGGAAGTTGTTGAGGGGAGCAGATGATGACGAGTTGGGTTGGAGTACTGCAGGACATGAAAGAAGCAGCAATTCTCTTGTTGGAGGTAGCGGAGACCATGTTGATCATCCATTTGTGATTCATCCTGAGAACTGGTGGTACATGGTATGGAAACACATAATTCTGGTATGGGCAGTGTACTCATCATTCTTCACACCAATGGAGTTCGGTTTCTTCAGAGGTCTCACTGGGAAGCTCTTCCTCCTTGATATAGCTGGCCAGATTGCTTTTCTCATCGACATTGTTGTCCAGTTCTCTCTCGCCTACCGTGACACGCATTCCTACTGTATGGTCTATGATCGCAAAGAAATTGCCAAGAGGTACTTGAAGTCCAGGTTCACTGTTGATTTTCTGGGTTGTATGCCCTGGGATGAAATATACAAGGCTGTTGGCAGAAAAGAACCAGTTAGGTATCTGCTATGGATTAGGCTAACTCGAGCATATAGAGTCACGGAGTTTTTTGAGCGACTGGAGAAAGACATTCGCATCAATTACCTCATGACAAGAATTGTGAAACTTTTTGTGGTGGAGCTCTATTCCACGCATACAGCTGCCTGCATTTTCTACTATCTGGCTACCACTGTGCCTCCTTCCCAAGAAGGTTACACATGGATAGGAAGTTTAAAGATGGGTGACTTCAGCTATGCACACTTTAGAGATATTGATCTTTGGAAAAGATACGTTACTTCTCTCTATTTTGCAGTGGTTACCATGGCGACTGTAGGTTACGGAGAGATACATGCAGTGAATGTGAGAGAAATGATATTCATTATGGCGTATGTCTCCTTTGACATGATTCTTGGTGCTTATCTTCTCGGTAACATGACTGCACTAATCGTCAAAGGTTCACGAACAGAAAGGTTCAGAGACAAAATGACTGATATTATCAAATACATGAATAGAACCAAGGTAGATAAGCAGATAACAAAAGCAATTAAGGGCCACCTCAGGTTACAGTTTGAACGAAGAAATAATGATAATTCTGTTCTTCAGGATGTTCCAACTTCTATCCGTACTAAGATTTCACAGAATTTGTACGAGAATTTTCTGCAGAGTGTTCCTCTTTTCAAAGGATGCTCTCTGGGGTTCATTAAGCTGATTGCTACCAGAGTCCACGAAGAGTTTTTCCTTCCGGGAGAAGTGGTCATAGAACAGGGCATTGTAGCAGATCAACTTTATTTTGTTGGTCATGGTGAGCTGGAAGAGGTGAGTAGGAGTGAACATGATGGCAAAGAAGAGTTAGTTATGCAATTGCATGCCTATAGCTCGTCCCCAGATGTTTCATTCCTATGCAACATTCCACAACCTTATATAGTTCGAGCTCATGAATTTTCCAGGGTTTTGAGACTTGATAAACAATCTTTTAAAGAAACTCTAGAGATATATTTTCTTGATGGTCGGATTATCTTGAAGAATCTCCTCGAGGGGAAAGGCTCTAATATACAGAAGCGGATCTCAGAATCAGATATCACGTTGGATATTGCTAAACATGAAATAGAACAAGCTACAAGGGTCAATTGTGCTGCATATATGGGAGATTTGTACCGATTGAAACGTCTGATTGATGCAGGAGCAGATCCGAATATCACAGATTATGATGGAAGATCACCTTTGCATATCTGTGCCGCAAAAGGTTATGCTGATCTAACTGATTTTCTTATCAAACAAGGAGTAAGAGTTAACATTACAGATAGTTTTGGAAACACTCCCTTGATGGATGCGATCAAGAATGGGCATGATGAAGTGGCTGCTTTACTCGTGAAAGCCGGTGCGGCACTGACAATTGATGAAGCTGGTAATTTTCTATGCGTCATTACTGCAAGGAAAGACAGAGTACTGTTGGAAAGGATTTTGGCCTGTAGTATAAGTCCAAATTCTCGAAACTACGATCAGCGAACGCCCCTTCACGTAGCTGCTTCTGAAGGTCTATTTGAGATTGCTGAATTACTTGTGGAGAAAGGTGCAAGCGTTTTATTGAAAGATAGATGGGGAAACACAACACTTGATGAAGCCTGGAAGTGGGGAGATAAGGCTATGATTAAATTGCTTGAAGCTGCACGAATATCTCAGTTGGCAGAGTTGGTTGATACTACCAGGGCAAAAGAAGGTGAAGTGCAGAAAAAGAAATGCACTGTTTTTCCTTTCCACCCCTGGGACCATAAAGAGGAGAGAATACAAGGGATTGTCCTATGGGTTCCTCATAGCATTGATGAGCTGATAATAATGGCGATGAAGCATTTGCAATGTTCTGGTGCTTATTGCCTTCTATCTCAAAACGGGGGTAAAATTGTTGATGTTGATGTTATTGAAAACAATGACAAATTATATTTAGTCGGTGACTAG 2517 0.4144 MIRRRGGEESGESDEVMSVEDHVERELKREDSTRRTPWSRISKCFRKLLRGADDDELGWSTAGHERSSNSLVGGSGDHVDHPFVIHPENWWYMVWKHIILVWAVYSSFFTPMEFGFFRGLTGKLFLLDIAGQIAFLIDIVVQFSLAYRDTHSYCMVYDRKEIAKRYLKSRFTVDFLGCMPWDEIYKAVGRKEPVRYLLWIRLTRAYRVTEFFERLEKDIRINYLMTRIVKLFVVELYSTHTAACIFYYLATTVPPSQEGYTWIGSLKMGDFSYAHFRDIDLWKRYVTSLYFAVVTMATVGYGEIHAVNVREMIFIMAYVSFDMILGAYLLGNMTALIVKGSRTERFRDKMTDIIKYMNRTKVDKQITKAIKGHLRLQFERRNNDNSVLQDVPTSIRTKISQNLYENFLQSVPLFKGCSLGFIKLIATRVHEEFFLPGEVVIEQGIVADQLYFVGHGELEEVSRSEHDGKEELVMQLHAYSSSPDVSFLCNIPQPYIVRAHEFSRVLRLDKQSFKETLEIYFLDGRIILKNLLEGKGSNIQKRISESDITLDIAKHEIEQATRVNCAAYMGDLYRLKRLIDAGADPNITDYDGRSPLHICAAKGYADLTDFLIKQGVRVNITDSFGNTPLMDAIKNGHDEVAALLVKAGAALTIDEAGNFLCVITARKDRVLLERILACSISPNSRNYDQRTPLHVAASEGLFEIAELLVEKGASVLLKDRWGNTTLDEAWKWGDKAMIKLLEAARISQLAELVDTTRAKEGEVQKKKCTVFPFHPWDHKEERIQGIVLWVPHSIDELIIMAMKHLQCSGAYCLLSQNGGKIVDVDVIENNDKLYLVGD* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00139 838 SMART ANK_2a 688 717 IPR002110 GO:0005515
Pte16g00139 838 SMART ANK_2a 558 587 IPR002110 GO:0005515
Pte16g00139 838 SMART ANK_2a 591 620 IPR002110 GO:0005515
Pte16g00139 838 SMART ANK_2a 721 750 IPR002110 GO:0005515
Pte16g00139 838 SMART ANK_2a 624 653 IPR002110 GO:0005515
Pte16g00139 838 Pfam Ankyrin repeats (many copies) 677 729 IPR002110 GO:0005515
Pte16g00139 838 ProSiteProfiles Ankyrin repeat profile. 688 720 IPR002110 GO:0005515
Pte16g00139 838 SUPERFAMILY cAMP-binding domain-like 341 531 IPR018490 -
Pte16g00139 838 Gene3D - 657 751 IPR036770 -
Pte16g00139 838 Pfam Ankyrin repeats (3 copies) 566 652 IPR002110 GO:0005515
Pte16g00139 838 Pfam KHA, dimerisation domain of potassium ion channel 766 835 IPR021789 -
Pte16g00139 838 Gene3D Helix hairpin bin 341 400 - -
Pte16g00139 838 ProSiteProfiles Ankyrin repeat region circular profile. 688 720 - -
Pte16g00139 838 MobiDBLite consensus disorder prediction 1 33 - -
Pte16g00139 838 Gene3D Jelly Rolls 401 521 IPR014710 -
Pte16g00139 838 ProSiteProfiles KHA domain profile. 767 838 IPR021789 -
Pte16g00139 838 Gene3D - 93 339 - -
Pte16g00139 838 FunFam Potassium channel KAT2 401 538 - -
Pte16g00139 838 Pfam Ion transport protein 93 337 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pte16g00139 838 Gene3D - 550 656 IPR036770 -
Pte16g00139 838 PRINTS EAG/ELK/ERG potassium channel family signature 329 338 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte16g00139 838 PRINTS EAG/ELK/ERG potassium channel family signature 128 138 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte16g00139 838 PRINTS EAG/ELK/ERG potassium channel family signature 285 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte16g00139 838 PRINTS EAG/ELK/ERG potassium channel family signature 237 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte16g00139 838 SUPERFAMILY Ankyrin repeat 548 742 IPR036770 -
Pte16g00139 838 PANTHER POTASSIUM CHANNEL AKT1 69 836 IPR045319 GO:0005249|GO:0006813
Pte16g00139 838 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Pte16g00139 838 CDD CAP_ED 413 528 IPR000595 -
Pte16g00139 838 Pfam Cyclic nucleotide-binding domain 433 518 IPR000595 -
Pte16g00139 838 ProSiteProfiles Ankyrin repeat region circular profile. 591 622 - -
Pte16g00139 838 FunFam Potassium channel SKOR 93 338 - -
Pte16g00139 838 SUPERFAMILY Voltage-gated potassium channels 87 338 - -
Pte16g00139 838 ProSiteProfiles Ankyrin repeat profile. 624 656 IPR002110 GO:0005515
Pte16g00139 838 ProSiteProfiles cAMP/cGMP binding motif profile. 413 517 IPR000595 -
Pte16g00139 838 ProSiteProfiles Ankyrin repeat region circular profile. 624 649 - -
Pte16g00139 838 SMART cnmp_10 413 532 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00139 Pte-Chr16 1519578 1525171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00139 21 720 Ion Channels AT5G37500 57.064 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00139 K21867 - qsa:O6P43_005230 1115.14