Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00100 ATGCCTCCGCCTAGCGGAGACTATGAAGACGAAGGATTTTCAGGGAACGAAATAGACGATGACGACGATCTCAATATTGAAGGTTTAGATGACATACGATTGGCTTGTATGCCTTCAACTGAAGCAGATGATGACCACGACCGACCGTACACTTCCGCCGCCGAATGGTCTGGAGGCGTGACCGTGGCTTCCTCTGTCCATGTTGATGATGATGGCGAGGATGATTTTGAATTGGCCCGAAACATTATGAACCGATATTCTGGTGATGTTGGTGATGGTGCACTCTGTACGGTCACTGAATCTGATGATGATCTTGCTGACCGTGAATTGCTTCAGTCAATAGAGAAGAAGTATTCAGTTAATTTGGATGTGTCTCAGCCAATCTCTTCGAAGCCTCTGAGTTCTATTCCGCCTGCGATGCTTGATGACGACGAGGACGATTTTGAAACGCTACGTGCAATTGAGAAGCGGTTTAGGGCTTATGTTAAAGCCGAGAATCCATCGAGGGAACCTGTATCAGATACCTCATACAAGGAGGAAAGTTCTGACAAATTGTTACCCAGCAATATGCCATGTGATCTCCCAGATGCTCGAAGACCAACTGATTTGTTGGCTGAGGCTACAAAAACTAGTGAAACTCATGCATCTTCACAATTGCCAAGAACAAGATCGCAGTTTCCTTTAGCCGCACAGTTTATAATTGATGCCATTAAGAAGAATAGGTCTTCTCAGAGGTTTCTTCGAGCCAAATTGATTCAGATGGAATCAAAAATTGAAGAGAACAAAGAGCTCAGGAAACGCTTGGAAGCTCTTAAGGATTTCCAGACATTATGCAGGAAAAGGACAGGGCATGCATTATCCCTTAAGAAGGATCCTCGTGTCCAGCTAATATCAGCGAAAAAGATCAACCTTAAAAAAGCATCTCCAATGCATTTCGGGCCAGAAGAGAATGCTCACGTGGCAAATTATAAGAGAGTACTGGGGAGCTTTCCTCTCTCATTTGTCCAAAAGAAATGGTCGAACAAAGAAAAGGAAAATCTTGGAAAGGGAATAAGACAAGAATTTCAAGAAATGTTGACTCAAGTCTCCCTGAATATGTTCAGTTTAGATGGCTCGTCTGGAGATATCAATGATTTTGATAAAGTTCTTGCATCCATTAAAGATTTTGAAATCACGCCGGAGCATATTAGAGAGTTCCTGCCCAAGGTTAATTGGGATAAGTTGGCTTCCAAGTATGTTGTTGGACGTTCTGGTGCAGAATGTGAAGCAAGATGGTTAAATTGTGATGATCCTTTGATCAACCAAAGCACTTGGAATAGTGAAGAGGATAAGACTCTTCTTGACATAGTCAGCGAAGAAGGACCTAGAAACTGGTTTGACATTGCCCAATCATTAAGTACAGGAAGGACACCCTTCCAGTGTCTTCTGCGGTATCAAAGGAGTTTAAATCCTTCTATGTTAAATAAGGAATGGACTGAACAAGAGGATGATAAACTTCAAACTGCTGTGGAGAGATTTGGCGAGAATGACTGGCAGTCAGTAGCTTCTGCTGTAGAAAATCGTACAGGTGCTCAGTGTTCTAACAGATGGAAAAAGTCCCTCTGTCCACAAAGGAAGGGGAGCTTTAGCCCAGATGAGGATAAACGCCTAAAAATAGGAATAATGTTTTTTGGGCAGAAATGGGAAAAAATAGCTCAATATATACCTGGTCGCACTGGAGCTCAATGCAGAGAAAGGTATGTGAACAGTTTGGATCCTCAACTGAAGTGGGATGCATGGTCTGAAGAAGAGGATGCGAGACTGATAGCAGCCTTGGAGAAATACAAGTTCTGCTGGTCAAAGATTGCAATAGAAGTGGATAAGCGCACTGATGCTCAATGTCGGAAGAGATGGATGAAGTTGTTTCCAGAAGATGTTCCAAAACTCCAAGAAGCAAAGAAGAGGCAAAAGACTGCTCTCATTAGTAACTTCGTTGATCGGGAGGCTGAACGTCCTGCCTTTAGTCTGGATAGTTTTCTTCCTTCACCATTGTTATGTTCAGCACCTGAATCTGACAATCTTTGTAAAAGAAGGAAGAGGAACACCAGTAAAGTTGCAAGGGTAAAGGGCAAACGATGTGATAAACAATCCCAGAATGTTCTGAAGAAGACTAAAACAAGGGAAAGAAAGAGACGTGATGAGAATTATTCTGGTGAACAACAGCTTGTCGTCACATCCAATGAGATTGAACCCTACAATGATGATCTGGTACATGCTGTTGGACCACATTCAGGAAATAATTTAATCATAGCTGCGGCAGATCATTGTCTTGCACCTCAAGATGTAGCATTGGTGAATGATAAACAAGCCCATAATGCTCTCAAGAGGACTAGAACAAGAAAACGTAAGAAACGTAATGAGAATTATTCTTGTGAACAGCATGTTGATTCATCCAATGAGATTGAGCCCTACAATGATGCTCCAGTTGCAGAGGATGCTGTTGGGCGGCATTCAGGTAATAATTTAATCCTAGTTGTGCCAGATAGTTGTCTTGCACCTCAAGATGCAGCATTGGTGAATGATAAACAAGCCCCTAATGCTCTCAAGAAGACTAGAACAAGAAAACACAAGAAAAGCAATGAGAATTATTCTTGTGATCAGCATGTTGTTACATCCAATGAGATTGAGCCCTACAATGATGCTCCGGTTGTAGAGGATGCTGTTGGACGGCACTCAGGAAATAGTTCAATCATTGCTGTTCCAGATAATTGTCTGATACCTCCAGATGCAGCATTGGTGAAAGATAAAAAACGAATTTCAGAGTTGGGTAGTCGTGGTAAAAAGAAGACTTCTAACTTGAAATCAAGAAAGGAAAAATCTACCATACTACCTTTGGAGATCCATGGTTCATTGTTATCTTCAAATCCTGAACCAGTGGGAATAAATGGTGTGTATGTGGAACCCTACAGAAACAACCTGGCTACTGAGGACAATTGGCAGGAGCAATTGTGCGGTAAAGAAACTCGTGAAAACTTTTTGCAGTTAACTGAATCAGTAAGTTGTAGCAATCTCCAATTTCAGAATGATCATATTTCGCATTCAGAAGCTCAACTGGGAAGTCTTGCTGAGAAGACTCGGGAGACCCTGGATGGTGATGATATGTCTTTAGCTTGCTTTCTACAAAATAGGCGGCTAAAGAAGAAAAGGATTAAACTTACAGAAAACTACACTCAGACTGGAAAACGGATGTCAACTGGGACTGGAAATCATGGACCTCCAACTTGTTGCCTCAATGAATCTCTTGATATTGCGTCACATGCGAACTTGCAATCTGATGAATGGACCGCCCATAGTGTTTGTGAACCCAGTGGACTGAAACAGTCAAACAATGGGACGCCATTACTTAGGGAACAGGAGGCTGTAGATATGGCAATTGATAGTGAGAATGGTGAGTTGCCTCTCGTGTACCTTCTTGGTAGTAAATTGAAGAAACGGTTACGAGCTGCCAGTAAAAAATGCCGTACCTGGTGCTCCTCTTCGGGGAATGGATCTGGTTTGCTTGCAGATGCAGAAGTACGATGTAATGGAGACCATTCAAAAACATTCTCTCCATTTGTGAAAGAAAACAGAGAATATAAAATTCCCGTCATGTTGCAAGTACAGAATCAGCAGTCCAACTCGTCATGCAATATGAAAGCTTGTGACAGTGACAAAGATGGATCCATGTTAGTGAAAAAGAACTCTGCTTTTCAACGTGAAACTGCGGGGAAACCTGCAAACATTATCGTGGATGGACTCTGCGTGGATCTCAGTGATGCTACTACTTCCTTAAAGACTTATCAGAGACGTGGTAAAGGTAGAAGAAATGGTTGCCACCCTTAA 3861 0.4219 MPPPSGDYEDEGFSGNEIDDDDDLNIEGLDDIRLACMPSTEADDDHDRPYTSAAEWSGGVTVASSVHVDDDGEDDFELARNIMNRYSGDVGDGALCTVTESDDDLADRELLQSIEKKYSVNLDVSQPISSKPLSSIPPAMLDDDEDDFETLRAIEKRFRAYVKAENPSREPVSDTSYKEESSDKLLPSNMPCDLPDARRPTDLLAEATKTSETHASSQLPRTRSQFPLAAQFIIDAIKKNRSSQRFLRAKLIQMESKIEENKELRKRLEALKDFQTLCRKRTGHALSLKKDPRVQLISAKKINLKKASPMHFGPEENAHVANYKRVLGSFPLSFVQKKWSNKEKENLGKGIRQEFQEMLTQVSLNMFSLDGSSGDINDFDKVLASIKDFEITPEHIREFLPKVNWDKLASKYVVGRSGAECEARWLNCDDPLINQSTWNSEEDKTLLDIVSEEGPRNWFDIAQSLSTGRTPFQCLLRYQRSLNPSMLNKEWTEQEDDKLQTAVERFGENDWQSVASAVENRTGAQCSNRWKKSLCPQRKGSFSPDEDKRLKIGIMFFGQKWEKIAQYIPGRTGAQCRERYVNSLDPQLKWDAWSEEEDARLIAALEKYKFCWSKIAIEVDKRTDAQCRKRWMKLFPEDVPKLQEAKKRQKTALISNFVDREAERPAFSLDSFLPSPLLCSAPESDNLCKRRKRNTSKVARVKGKRCDKQSQNVLKKTKTRERKRRDENYSGEQQLVVTSNEIEPYNDDLVHAVGPHSGNNLIIAAADHCLAPQDVALVNDKQAHNALKRTRTRKRKKRNENYSCEQHVDSSNEIEPYNDAPVAEDAVGRHSGNNLILVVPDSCLAPQDAALVNDKQAPNALKKTRTRKHKKSNENYSCDQHVVTSNEIEPYNDAPVVEDAVGRHSGNSSIIAVPDNCLIPPDAALVKDKKRISELGSRGKKKTSNLKSRKEKSTILPLEIHGSLLSSNPEPVGINGVYVEPYRNNLATEDNWQEQLCGKETRENFLQLTESVSCSNLQFQNDHISHSEAQLGSLAEKTRETLDGDDMSLACFLQNRRLKKKRIKLTENYTQTGKRMSTGTGNHGPPTCCLNESLDIASHANLQSDEWTAHSVCEPSGLKQSNNGTPLLREQEAVDMAIDSENGELPLVYLLGSKLKKRLRAASKKCRTWCSSSGNGSGLLADAEVRCNGDHSKTFSPFVKENREYKIPVMLQVQNQQSNSSCNMKACDSDKDGSMLVKKNSAFQRETAGKPANIIVDGLCVDLSDATTSLKTYQRRGKGRRNGCHP* 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00100 1286 ProSiteProfiles Myb-like domain profile. 483 534 IPR001005 -
Pte16g00100 1286 CDD SANT 592 635 IPR001005 -
Pte16g00100 1286 Gene3D - 537 590 - -
Pte16g00100 1286 CDD SANT 490 534 IPR001005 -
Pte16g00100 1286 CDD SANT 541 584 IPR001005 -
Pte16g00100 1286 Pfam Myb-like DNA-binding domain 437 480 IPR001005 -
Pte16g00100 1286 Pfam Myb-like DNA-binding domain 592 634 IPR001005 -
Pte16g00100 1286 Gene3D - 436 486 - -
Pte16g00100 1286 Pfam Myb-like DNA-binding domain 491 550 - -
Pte16g00100 1286 MobiDBLite consensus disorder prediction 1 24 - -
Pte16g00100 1286 Coils Coil 247 274 - -
Pte16g00100 1286 MobiDBLite consensus disorder prediction 705 730 - -
Pte16g00100 1286 ProSiteProfiles Myb-like domain profile. 585 635 IPR001005 -
Pte16g00100 1286 MobiDBLite consensus disorder prediction 855 874 - -
Pte16g00100 1286 SUPERFAMILY Homeodomain-like 537 631 IPR009057 -
Pte16g00100 1286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 491 538 IPR017930 -
Pte16g00100 1286 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 1194 - -
Pte16g00100 1286 SMART sant 589 637 IPR001005 -
Pte16g00100 1286 SMART sant 434 484 IPR001005 -
Pte16g00100 1286 SMART sant 538 586 IPR001005 -
Pte16g00100 1286 SMART sant 487 536 IPR001005 -
Pte16g00100 1286 SMART sant 335 431 IPR001005 -
Pte16g00100 1286 MobiDBLite consensus disorder prediction 788 816 - -
Pte16g00100 1286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 486 IPR017930 -
Pte16g00100 1286 Gene3D - 591 638 - -
Pte16g00100 1286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 539 579 IPR017930 -
Pte16g00100 1286 ProSiteProfiles Myb-like domain profile. 538 584 IPR001005 -
Pte16g00100 1286 SUPERFAMILY Homeodomain-like 410 479 IPR009057 -
Pte16g00100 1286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 585 639 IPR017930 -
Pte16g00100 1286 Gene3D - 489 536 - -
Pte16g00100 1286 SUPERFAMILY Homeodomain-like 467 534 IPR009057 -
Pte16g00100 1286 ProSiteProfiles Myb-like domain profile. 430 482 IPR001005 -
Pte16g00100 1286 MobiDBLite consensus disorder prediction 164 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00100 Pte-Chr16 1161570 1168404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00100 179 687 MYB-Related Transcription Factor Family AT3G18100 47.348 2.55e-158 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g00100 Myb_DNA-bind_6 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00100 K09422 - qsa:O6P43_005158 686.026