Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00095 ATGTCCTCCTCTCGCAAACTCTTCCATTCCCTCTTCCGTACCTCTCTTTGTCGCTCTCTTAAACCCTCACTCTCGAATACTGATCCGAAATTTATTCTCACGCGCCACCGGCCTTCTCAGATCGGGTACTTCCTCTCACGTGCCGCTCACTACGCTACCTCCGCGGCGGCGGAATCGGCTCCGCCTCCACCAGTAAAGACTCAGCCTACTGAGTCGAAGGGTAAGATCACGGATGAGTTCACTGGTAAGGGTGCGATCGGTCAGGTCTGTCAAGTTATTGGAGCTGTTGTGGATGTTAGGTTTGATGAAGGGTTGCCTCCCATCTTGACTGCTCTTGAGGTAATGGATAATTCGATCCGGTTGGTGCTTGAGGTGGCTCAGCATTTGGGGGAGAACATGGTTAGAACCATTGCTATGGATGGTACTGAAGGGCTGGTTAGAGGGCAGAGGGTTCTTAACACTGGATCACCCATCACTGTTCCCGTTGGTAGGGCTACCCTTGGTCGTATCATAAATGTTATTGGAGAGCCCATCGATGAGAAGGGCGAGATAAAAACCGAGCATTCATTGCCCATTCACAGAGAAGCTCCTGCTTTTGTTGATCAGGCAACAGAGCAACAGATTCTTGTCACTGGAATCAAGGTTGTTGTTGATCTCCTTGCGCCTTATCAAAGAGGTGGAAAGATTGGACTCTTTGGTGGTGCTGGTGTAGGGAAGACTGTCCTCATTATGGAACTCATTAACAATGTGGCTAAGGCCCATGGTGGTTTCTCTGTTTTTGCTGGTGTGGGCGAACGAACTCGAGAGGGGAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTTATTAAGCTCGGTGACAAACAGAGTGAGAGCAAGTGTGCTCTAGTATATGGGCAAATGAACGAGCCTCCTGGAGCTCGTGCTCGAGTTGGACTAACAGGGTTGACTGTTGCTGAGCATTTCCGAGATGCAGAGGGGCAGGATGTGCTGCTTTTCATTGACAACATTTTCCGCTTTACCCAAGCTAACTCAGAAGTGTCTGCCCTGCTTGGTCGTATCCCGTCAGCTGTTGGTTATCAGCCTACCTTGGCCACAGACCTTGGAGGTCTGCAGGAGCGCATAACAACCACCAAAAAAGGCTCAATTACATCTGTCCAGGCTATTTATGTGCCTGCTGATGATTTGACTGATCCAGCCCCTGCAACCACTTTTGCACATCTTGATGCCACCACTGTGCTTTCTCGGCAGATTTCTGAGCTTGGTATCTATCCTGCCGTTGATCCATTGGATTCGACATCTCGCATGCTTTCTCCTCATATATTGGGAGATGATCACTATAACACAGCACGTGGTGTTCAGAAAGTTCTTCAAAATTATAAGAATTTGCAAGATATTATTGCCATTTTGGGGATGGATGAACTCAGTGAAGATGACAAACTAACAGTTGCTCGGGCTCGCAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCATGTTGCGGAGGTTTTCACCGGAGCACCTGGAAAATATGTAGAACTAAAGGAGAGTATTTCCAGCTTCCAGGGTGTTCTTGATGGTAAATACGACGACCTATCTGAGCAATCATTTTACATGGTTGGAGGAATTGACGAAGTCATTGCTAAGGCAGACAAGATTGCCAAGGAGAGTGCTTCATAG 1677 0.48 MSSSRKLFHSLFRTSLCRSLKPSLSNTDPKFILTRHRPSQIGYFLSRAAHYATSAAAESAPPPPVKTQPTESKGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVMDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGEIKTEHSLPIHREAPAFVDQATEQQILVTGIKVVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGDDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESISSFQGVLDGKYDDLSEQSFYMVGGIDEVIAKADKIAKESAS* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00095 558 ProSitePatterns ATP synthase alpha and beta subunits signature. 425 434 IPR020003 GO:0005524
Pte16g00095 558 FunFam ATP synthase subunit beta 437 556 - -
Pte16g00095 558 FunFam ATP synthase subunit beta 75 157 - -
Pte16g00095 558 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 157 IPR036121 GO:0046034|GO:1902600
Pte16g00095 558 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 437 553 - -
Pte16g00095 558 Pfam ATP synthase alpha/beta family, beta-barrel domain 89 155 IPR004100 GO:0046034|GO:1902600
Pte16g00095 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 440 IPR027417 -
Pte16g00095 558 Gene3D - 158 436 IPR027417 -
Pte16g00095 558 MobiDBLite consensus disorder prediction 54 73 - -
Pte16g00095 558 SMART AAA_5 225 497 IPR003593 GO:0016887
Pte16g00095 558 NCBIfam F0F1 ATP synthase subunit beta 86 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pte16g00095 558 Gene3D - 74 157 - -
Pte16g00095 558 CDD ATP-synt_F1_beta_C 441 548 - -
Pte16g00095 558 Hamap ATP synthase subunit beta [atpB]. 84 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pte16g00095 558 CDD F1-ATPase_beta_CD 159 439 - -
Pte16g00095 558 PANTHER ATP SYNTHASE 71 555 - -
Pte16g00095 558 Gene3D - 437 558 IPR024034 -
Pte16g00095 558 PIRSF ATPase_subunit_beta 10 558 - -
Pte16g00095 558 Gene3D ATP synthase, F1 beta subunit 1 51 IPR042079 -
Pte16g00095 558 FunFam ATP synthase subunit beta 158 436 - -
Pte16g00095 558 CDD ATP-synt_F1_beta_N 85 158 - -
Pte16g00095 558 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 216 434 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00095 Pte-Chr16 1109877 1113822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00095 188 543 Primary Pumps ATPases(2) AT1G78900 27.346 5.69e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00095 K02133 - cave:132184248 959.903