Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00092 ATGTCAGAGGCAGAGCTCGATGTCTCGAAGAAAGTTGCTGATAGATATCTGAAACGTGAAATCCTCGGTGAAGGTACTTTCGGTGTCGTATACAAAGCCATTGACACTAAGACAGGTCAGACAGTTGCAATTAAGAAAATTCGGATAGGGAAGCAGAAGGATGGGGTGAACGTTACTGCTCTTAGGGAGATTAAACTACTCAAGGAAATCAAAGATCCAAATATTATTGAGTTAATAGATGCATTCCCACATAAGGGGAATTTGCACCTTGTCTTTGAGTTCATGGAGACAGACCTAGAAACCATTATACGTGATCAAAATATAGTTCTGTCACCTGCAGATGTAAAATCTTACCTCCAGATGACACTAAAGGGTCTTGCTGTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAACAATTTGCTGATAGGACCTGATGGCCAGCTTAAACTTGCTGACTTTGGTTTAGCACGAATATTTGGGAGTCCGGATTGTAGGTACACCCATCAGGTTTTCGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGTTCTAAACAATATGGTGCTGGTGTGGATGTTTGGGCAGCTGGCTGTATATTTGCTGAGCTTCTCCTTCGTCGGCCATTTCTACAGGGAAGTAGTGACATTGATCAATTAGGGAAAATTTTTCATGCATTGGGGACTCCAACACCTTCTCAATGGCCTGATATGGTATATCTTCCTGATTATGTGGAATACCAACACGTTCCAGCCAGGCAGTTACGAACTTTATTTCCAATTGCAACTGATGATGCATTAGACCTTTTATCAAAGATGCTTGCACATGACCCAAAAGCTAGAATTTCAGTGCAGCAGGCATTAGATCACAGGACGTCTAGACGAGTGATGCCAGATCGTGATAATCTTGAAGGCAAGGCACATCCTACTGCTGATAAAGTACATGACAATGTAATTGGTGGAAATGCAGGGAATAATGAACCGGCGCCAATGTCAGTAGATTTTTCTATTTTTGGCTTAAGACCTCCAAATAGGCCTACAATTAACAGTGCTGACAGATCGCATTTAAAGAGGAAGTTAGATCTGGAATTCTAG 1104 0.4212 MSEAELDVSKKVADRYLKREILGEGTFGVVYKAIDTKTGQTVAIKKIRIGKQKDGVNVTALREIKLLKEIKDPNIIELIDAFPHKGNLHLVFEFMETDLETIIRDQNIVLSPADVKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGPDGQLKLADFGLARIFGSPDCRYTHQVFARWYRAPELLFGSKQYGAGVDVWAAGCIFAELLLRRPFLQGSSDIDQLGKIFHALGTPTPSQWPDMVYLPDYVEYQHVPARQLRTLFPIATDDALDLLSKMLAHDPKARISVQQALDHRTSRRVMPDRDNLEGKAHPTADKVHDNVIGGNAGNNEPAPMSVDFSIFGLRPPNRPTINSADRSHLKRKLDLEF* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00092 367 Gene3D Transferase(Phosphotransferase) domain 1 97 304 - -
Pte16g00092 367 FunFam Cyclin-dependent kinase D-1 7 96 - -
Pte16g00092 367 SUPERFAMILY Protein kinase-like (PK-like) 11 294 IPR011009 -
Pte16g00092 367 ProSiteProfiles Protein kinase domain profile. 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00092 367 ProSitePatterns Protein kinases ATP-binding region signature. 22 51 IPR017441 GO:0005524
Pte16g00092 367 Gene3D Phosphorylase Kinase; domain 1 6 96 - -
Pte16g00092 367 CDD STKc_CDK7 15 294 IPR037770 GO:0005675|GO:0008353|GO:0070985
Pte16g00092 367 PANTHER CELL DIVISION PROTEIN KINASE 14 295 - -
Pte16g00092 367 SMART serkin_6 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00092 367 FunFam Putative cyclin-dependent kinase 7 97 306 - -
Pte16g00092 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Pte16g00092 367 Pfam Protein kinase domain 18 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00092 Pte-Chr16 1092027 1095928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00092 6 367 Core Cell Cycle Gene Families AT1G73690 67.164 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Pte16g00092 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00092 K02202 - jre:109003593 609.372