Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00091 ATGTCAGAGGCAGAGCTCGATGTCTCGAAGAAAGTTGCTGATAGATATCTGAAACGTGAAATCCTCGGTGAAGGTACTTTCGGTGTCGTATACAAAGCCATTGACACTAAGCAGACAGGTCAGACAGTTGCAATTAAGAAAATTCGGATAGGGAAGCAGAAGGATGGGGTGAACGTTACTGCTCTTAGGGAGATTAAACTACTCAAGGAAATCAAAGATCCAAATATTATTGAGTTAATAGATGCATTCCCACATAAGGGGAATTTGCACCTTGTCTTTGAGTTCATGGAGACAGACCTAGAAACCATTATACGTGATCAAAATATAGTTCTGTCACCTGCAGATGTAAAATCTTACCTCCAGATGACACTAAAGGGTCTTGCTGTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAACAATTTGCTGATAGGACCTGATGGCCAGCTTAAACTTGCTGACTTTGGTTTAGCACGAATATTTGGGAGTCCGGATTGTAGGTACACCCATCAGGTTTTCGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGTTCTAAACAATATGGTGCTGGTGTGGATGTTTGGGCAGCTGGCTGTATATTTGCTGAGCTTCTCCTTCGTCGGCCATTTCTACAGGGAAGTAGTGACATTGATCAATTAGGGAAAATTTTTCACGCATTGGGGACTCCAACACCTTCTCAATGGCCTGATATGGTATATCTTCCTGATTATGTGGAATACCAACACGTTCCAGCCAGGCAGTTACGAACTTTATTTCCAATTGCAACTGATGATGCATTAGACCTTTTATCAAAGATGCTTGCACATGACCCAAAAGCTAGAATTTCAGTGCAGCAGGCATTAGATCACAGGTATTTCTCTTCTGCTCCTGCACCTACTAATCCAGCCAAGCTTCGGAGACCCGCTCCTAAAAGAGAATTGGACGGGTCTGATTTCAATCCCATCGATGGTCCTACCGTTTTATCACCTCCTAGGAAGTCTAGACGAGTGATGCCAGATCGTGATAATCTTGAAGGCAAGGCACATCCTGCTGCTGATAAAGTACATGACAATGTAATTGGTGGAAATGCAGGGAATAATGAACCGGCGCCAATGTCAGTAGATTTTTCTATTTTTGGCTTAAGACCTCCAAATAGGCCTACAATTAACAGTGCTGACAGATCGCATTTAAAGAGGAAGTTAGATCTGGAATTCTAG 1230 0.4293 MSEAELDVSKKVADRYLKREILGEGTFGVVYKAIDTKQTGQTVAIKKIRIGKQKDGVNVTALREIKLLKEIKDPNIIELIDAFPHKGNLHLVFEFMETDLETIIRDQNIVLSPADVKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGPDGQLKLADFGLARIFGSPDCRYTHQVFARWYRAPELLFGSKQYGAGVDVWAAGCIFAELLLRRPFLQGSSDIDQLGKIFHALGTPTPSQWPDMVYLPDYVEYQHVPARQLRTLFPIATDDALDLLSKMLAHDPKARISVQQALDHRYFSSAPAPTNPAKLRRPAPKRELDGSDFNPIDGPTVLSPPRKSRRVMPDRDNLEGKAHPAADKVHDNVIGGNAGNNEPAPMSVDFSIFGLRPPNRPTINSADRSHLKRKLDLEF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00091 409 SMART serkin_6 16 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00091 409 SUPERFAMILY Protein kinase-like (PK-like) 11 303 IPR011009 -
Pte16g00091 409 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Pte16g00091 409 FunFam Putative cyclin-dependent kinase 7 98 313 - -
Pte16g00091 409 ProSiteProfiles Protein kinase domain profile. 16 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00091 409 Gene3D Transferase(Phosphotransferase) domain 1 98 313 - -
Pte16g00091 409 CDD STKc_CDK7 15 309 IPR037770 GO:0005675|GO:0008353|GO:0070985
Pte16g00091 409 MobiDBLite consensus disorder prediction 338 352 - -
Pte16g00091 409 PANTHER CELL DIVISION PROTEIN KINASE 14 301 - -
Pte16g00091 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Pte16g00091 409 Pfam Protein kinase domain 18 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00091 409 ProSitePatterns Protein kinases ATP-binding region signature. 22 52 IPR017441 GO:0005524
Pte16g00091 409 MobiDBLite consensus disorder prediction 390 409 - -
Pte16g00091 409 FunFam Cyclin-dependent kinase D-1 7 97 - -
Pte16g00091 409 MobiDBLite consensus disorder prediction 297 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00091 Pte-Chr16 1060155 1064039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00091 10 409 Core Cell Cycle Gene Families AT1G18040 71.820 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Pte16g00091 Pkinase 3.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00091 K02202 - jre:109003593 687.952