Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00052 ATGGCAAATCGACTGAAGGAGGACGAGAAGAATGAAAAACTTATACGAGGCCTTCTTAAGCTATCTGAGAATCGTAGATGTATCAATTGTAATAGCTTGGGACCTCAGTATGTTTGCACAAATTTCTGGACATTCATTTGCACAAACTGTAGTGGAATCCACCGGGAATTCACACACCGGGTAAAATCAGTTTCAATGGCGAAATTTACCTCACAAGAAGTTAATGCTCTTCGAGAAGGTGGGAATCAGCGTGCGAAAGAAATTTACTTCAAAGAATTGGATCCACAACGCCATTCTCTTCCTGATACTAGTAATGTTGACAGGCTTCGAGACTTTATTAAGCATGTGTATGTGGATAGAAGATATACTGATGAAAGGAACTACGATAAACCACCGAGAGGAAAGATGGTTGATAAGGAAGGTTCTCGAAGTCCACCATATGAGGACACGAGGTCCAGTTCTGGTGGAAGAAGTCCTGGATATGAACAGGACAGTAGACAGTATGGTGCGTATAAAAGAAGTCCAAGCCACCCTCAGATAGTCAATGATTGGCAACGCAATGATAGATTTCAGAACGGGAGGGGACCTGAAGATCGTATATCATCTGATGGAGATTATAAGTCAGAAGGGCAATCGCCTGAGCGACCAAAAGATCTGGATTTCTCAAGTCCGCCTGTGGTACGACCTGTAAGAGATATTTTAGGGGATAACATCGTCCCTCTACGTATAAGTGAGCCCCCAAAAGCAAATGGTGGAAGGACTGGTGATGGCTTTACACACACAGAGAGAACTGCATCTTCCAGTAGTTTGGGTTCCACTACTGGGAATCCAGCACACGTCAAATTAGAGAGCCCCAGAAGCCTTATTGATTTTGACGCAGAGCCTGAACCTCCTGTCCTTGCCATTGTTTCTCAAGCACAACAAAGTGACATGGCCTTTCCAGTTACAGAGCCAGCAAAAGCTGCTAATGAGAATAACTGGGCCTCTTTTGATACCGTCTTGATGCCAAAAGCTCCTCAAGGTCCTTCAAATGAAAATACACTAGATTCATTACTTTCTGAACTGTCAACTCCTGCTCCAGTACGTGGTCAAATTTTGGGAAGTCAAGGTGGTTCTCACGGTTTTGCAGCTCCTCCTGGGGGTAGTATGGCATCATCACCGGCACCAAATGGCTTATCTTTTCCATTGGCTGGCAATGGACCATTGTCATCTTTCAATTCCAATGATGGTCCTGTTGCATCAGTCAGCTTTTCAACCGTACTTCCGTCTAAAGTTCCAGTTGTAGCTCCAGGCTTGACAACTATGGCCCCAACTGCAGGTGAATTGCCGGTGTCTCATGCCAACCAGTGGAGAAACATGCAGTATCATCTACCATTCAATCAGTCTCCTGGACAGCATGTTGTACCAACTGGTGCAGGAGCTTCCAATAATCAGACTTTGAATATACCACCTATTTTGCAAGGTCCTTTAAAAGGACCAGTTCTGCATGCATCCCAGGTTGTCTCTAATCCAGTGTTACAGACAACTTTGGGTGCTGCTACTCAATATGCTGCTCCAAAAGACAAATCAAGTGGTAGAAAAGAACTTCCAGAGGAACTTTTTGCCGCTTCATTTGCACCCTTTCCTCCATCAATTCCAGGATGGAACATGGGTCCACCTTATCGCATGGTTGTCCCTATGCAGTTTAATACTCTCGTGCCTCCAAACTCTATGCAGTCATCAAAATCTGCAAATCCATTTAATGTCAGTGATGAATCGCACTCCATTCAGGCCCCAATGTTTCCTTCAATGTCATCTTTACAAGGTGCTTTACCAAATGTATTACCTCCATCAGCAAGCTTAACTCCAACTCCAATTTCAAATCCCACTTGGATGCCTCCTCAACCAGCATCTTACGGTCTTGCACTGTCTCTTCAAGTACCGTCTCATCCACCGCCAATGGCACCTACTAACATGTCATATACTGGGTATCAAGGGGTAGGTGGTTTTGGCACTGATGGTGCTGCATTTGGCTCCTCTAATCTAGATCAACAGCTGGTAAGTGGGATAACTGCACCTGCTCGTCCAAGTCCCTTCTCTTCGGCAGGAGGGAACCCATTTGGATGA 2106 0.4492 MANRLKEDEKNEKLIRGLLKLSENRRCINCNSLGPQYVCTNFWTFICTNCSGIHREFTHRVKSVSMAKFTSQEVNALREGGNQRAKEIYFKELDPQRHSLPDTSNVDRLRDFIKHVYVDRRYTDERNYDKPPRGKMVDKEGSRSPPYEDTRSSSGGRSPGYEQDSRQYGAYKRSPSHPQIVNDWQRNDRFQNGRGPEDRISSDGDYKSEGQSPERPKDLDFSSPPVVRPVRDILGDNIVPLRISEPPKANGGRTGDGFTHTERTASSSSLGSTTGNPAHVKLESPRSLIDFDAEPEPPVLAIVSQAQQSDMAFPVTEPAKAANENNWASFDTVLMPKAPQGPSNENTLDSLLSELSTPAPVRGQILGSQGGSHGFAAPPGGSMASSPAPNGLSFPLAGNGPLSSFNSNDGPVASVSFSTVLPSKVPVVAPGLTTMAPTAGELPVSHANQWRNMQYHLPFNQSPGQHVVPTGAGASNNQTLNIPPILQGPLKGPVLHASQVVSNPVLQTTLGAATQYAAPKDKSSGRKELPEELFAASFAPFPPSIPGWNMGPPYRMVVPMQFNTLVPPNSMQSSKSANPFNVSDESHSIQAPMFPSMSSLQGALPNVLPPSASLTPTPISNPTWMPPQPASYGLALSLQVPSHPPPMAPTNMSYTGYQGVGGFGTDGAAFGSSNLDQQLVSGITAPARPSPFSSAGGNPFG* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00052 701 CDD ArfGap_AGFG 12 124 - -
Pte16g00052 701 MobiDBLite consensus disorder prediction 257 280 - -
Pte16g00052 701 MobiDBLite consensus disorder prediction 190 216 - -
Pte16g00052 701 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Pte16g00052 701 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Pte16g00052 701 MobiDBLite consensus disorder prediction 366 389 - -
Pte16g00052 701 MobiDBLite consensus disorder prediction 124 280 - -
Pte16g00052 701 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Pte16g00052 701 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Pte16g00052 701 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Pte16g00052 701 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Pte16g00052 701 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Pte16g00052 701 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Pte16g00052 701 MobiDBLite consensus disorder prediction 147 161 - -
Pte16g00052 701 MobiDBLite consensus disorder prediction 124 146 - -
Pte16g00052 701 Pfam Putative GTPase activating protein for Arf 13 125 IPR001164 GO:0005096
Pte16g00052 701 PANTHER ARFGAP/RECO-RELATED 1 701 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00052 Pte-Chr16 547799 552397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00052 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 1.53e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00052 - - jre:108992670 740.725