Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00049 ATGGACGATATTGAAGACGATGCAAGATACCCACAAAAGAGTTATGCTATGAATCATCGTCACAATCCATATCTTCGCCAGAAACAACCGATTCGAAGTACTCCTCCGTATGCCCGCTCGTTTCCCACTCGATACGAAGAAGACGAGGAAGATGATGACTTGGACGATTACGATGTCATAAATGATCATTTAGGTTATGAGGAAGGGTACGATGGTGGAAATGATGTGCATGGAAGGAATTTTGAAGGGGACGATGATTTTGACAGAAACCCGAAGAAGAGAAAACTTAGGAGCTCTCCGTTTTCGGGTTACGGGTTTGTTCCCAGGATGAATTTACCAAATGGGGTTCGGAGTTCCAGTAGTGAGTGGACGGAGCATGCAACGTTTGTGTTGTTGGAGGTTTGGGGTGATAGGTTTTTACAACTTGGTAGGAAGAGTTTGAGGTCCGAGGACTGGCACGAGGTTGCTGAGAAAGTGTCAGAGGAGCTGAAGCTGAAGAAGACAGAAGCACAGTGTAGGAGTGTACTAGATAAATTGAAAAGAAGGTATCAGAAGGAGAAAGCTAAGGTTGAGGAAATGGGGTTGGCTGCTAGTAAATGGGCTTTTTTTAAGAAGATGGATATGTTGATGGCTTCTTCTCAGAAGCAAGAGTATGGTCTGGCTTGTGGTGTAGATTCTGGTGAATATGTGTTTATGAACACTAGAGTTTATTTGAACAGCTCAAATGGATTTGATGAGATGAGGGACAGTCCCGGTGAGTCTGAAGCATCTGATGATGAAAATGATTCGGATGAGTTACCTCCTAGGAGGCAAGGATTCACAGTAGGAAATGTTGGCAATGGTGATGATGATGATGATGAGGGTGAGGAGGAGTCTTCCTTTAGGATGTTGGCCGATTCTGTACAGAAGTTTGGGAAGATATATGAGAAAATTGAGAATAGTAAGAGGCAGCAAATGATAGAACTGGAGAAGATGCGGTTGGATTTCCATAGGGAGTTGGAGTTACAGAAGAAGCAGATTTTGGAGAGAGCCCAGGCAGAGATTGCCAAGTTACAGGAACAAGGAGGAGAAGATGGTGATGATTCTGATGATTCAGCAGAAAATCTTAGTGAATGA 1116 0.4355 MDDIEDDARYPQKSYAMNHRHNPYLRQKQPIRSTPPYARSFPTRYEEDEEDDDLDDYDVINDHLGYEEGYDGGNDVHGRNFEGDDDFDRNPKKRKLRSSPFSGYGFVPRMNLPNGVRSSSSEWTEHATFVLLEVWGDRFLQLGRKSLRSEDWHEVAEKVSEELKLKKTEAQCRSVLDKLKRRYQKEKAKVEEMGLAASKWAFFKKMDMLMASSQKQEYGLACGVDSGEYVFMNTRVYLNSSNGFDEMRDSPGESEASDDENDSDELPPRRQGFTVGNVGNGDDDDDEGEEESSFRMLADSVQKFGKIYEKIENSKRQQMIELEKMRLDFHRELELQKKQILERAQAEIAKLQEQGGEDGDDSDDSAENLSE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00049 371 Gene3D - 123 185 - -
Pte16g00049 371 Coils Coil 308 328 - -
Pte16g00049 371 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 113 355 IPR044823 -
Pte16g00049 371 Coils Coil 334 354 - -
Pte16g00049 371 MobiDBLite consensus disorder prediction 357 371 - -
Pte16g00049 371 Coils Coil 176 196 - -
Pte16g00049 371 MobiDBLite consensus disorder prediction 348 371 - -
Pte16g00049 371 MobiDBLite consensus disorder prediction 242 294 - -
Pte16g00049 371 MobiDBLite consensus disorder prediction 59 95 - -
Pte16g00049 371 MobiDBLite consensus disorder prediction 1 98 - -
Pte16g00049 371 Pfam Myb/SANT-like DNA-binding domain 121 208 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00049 Pte-Chr16 528352 530805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00049 123 350 Trihelix Transcription Factor Family AT1G54060 33.591 6.22e-22 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pte16g00049 Myb_DNA-bind_4 5.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00049 - - qsa:O6P43_007945 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00049 16 528352 530805 Pte16g00049 16 528352 530805 RCT