Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00045 ATGGAGACCCACAACCTCGTCCCAGCTTTCGTCGTAAAGACTTATCAGATGGTGAGTGACCCAACCACTGACACTCTTATCTCATGGGGTAGAGCAAACAACAGCTTCATCGTGATTGACCCTTTAGATTTTTGTCAAAGGATACTACCTGCATACTTTAAGCACAACAATTTCTCCAGTTTTGTTCGTCAGCTCAACACCTATGGGTTTAGAAAAGTGGATCCAGATCGTTGGGAGTTTGCGAATGAGTGGTTTCTTCGCGGGCAGACGCATTTGTTGAAGAATATTGTAAGGAAGAAGCACAACATCAGTACTTCTGTGTCAGCTGGTACTATCCAACTCAAGTATGAAGATTCTGATGAAGAAGGATTGATGTCTGAGATAGCGAGGTTGAAGGAGGAGCAGAAGGCATTGGAAAATGAGCTTGAAGGAATGAACAAGAGGTTGGAGGCTACAGAAAGAAGACCCCAACAAATGATGACTTTCCTGTACAAAGTTGTGGAGGACCCAGATATCCTTCCACGCATTTTGCAAGAGAGAAACCGAACCAGACAGCTCGGGGAGAAGAAACGAAGGCAACTGGTTTCTGCAACGTCTTCTTCTTCATCTTCAGGGATAGCAGGAACCAATTCAGTCAAGACTGAAGTTGAAGAAGAAGAAGGAACAGTGGGGGTGATTTCTTCGTCATCTCCGTCTCCGGATGCAGGTTTTGAAATGGAAAGCTTTTGTCAATCTCCTACTTCGCCGGGAACCGCCGCAGAAGTGATGCGAGGGTGCCCTTGGATGGGCCAACAGCAAGGTAATTGCCACTACACTCATACTGTCACGCCTTTCTCGACAGGGTTTGTGGCCGGAATCGAGGGTATGACGGGAATATATCCACCGCCTTATCTTAGCGGTGAAGGCATTAAGGAAGAGCAAATGAATAGTTTGACAGAGTTGGTGACACGGGTGGAGGGGAGTCCACCGCCGCCTTATCCATTTTCTCTTTTGGGTGGTGGTTTTTATTAG 1011 0.4659 METHNLVPAFVVKTYQMVSDPTTDTLISWGRANNSFIVIDPLDFCQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQTHLLKNIVRKKHNISTSVSAGTIQLKYEDSDEEGLMSEIARLKEEQKALENELEGMNKRLEATERRPQQMMTFLYKVVEDPDILPRILQERNRTRQLGEKKRRQLVSATSSSSSSGIAGTNSVKTEVEEEEGTVGVISSSSPSPDAGFEMESFCQSPTSPGTAAEVMRGCPWMGQQQGNCHYTHTVTPFSTGFVAGIEGMTGIYPPPYLSGEGIKEEQMNSLTELVTRVEGSPPPPYPFSLLGGGFY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00045 336 MobiDBLite consensus disorder prediction 179 249 - -
Pte16g00045 336 MobiDBLite consensus disorder prediction 192 211 - -
Pte16g00045 336 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte16g00045 336 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte16g00045 336 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte16g00045 336 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte16g00045 336 Coils Coil 121 155 - -
Pte16g00045 336 Gene3D - 2 100 IPR036388 -
Pte16g00045 336 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte16g00045 336 MobiDBLite consensus disorder prediction 223 249 - -
Pte16g00045 336 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte16g00045 336 FunFam Heat stress transcription factor B-4 2 100 - -
Pte16g00045 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 218 IPR027725 -
Pte16g00045 336 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00045 Pte-Chr16 490409 491554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00045 6 201 HSF AT3G24520 63.317 1.89e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte16g00045 HSF_DNA-bind 1.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00045 K09419 - zju:107431837 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00045 16 490409 491554 Pte16g00045 16 490409 491554 RCT