Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00017 ATGCCAAACTCAGAGACTGATACAAGTACCAACCGGACTTCCTCATCCTCATCTTACGGCTCTCACTTTATCTCTTCCCCTTCACCATCCACATCATCATCATCGACTACTGTTTCAGGTTCAGCTCAATCCACAAAAGTAGACCCGGTTCCGAATCCATTGCTGGCCGTGAGAGATGGCTTGCCTGAACCGGACCCGAAGAAACCCGCCAAAAGAACTAGAGATGATAGTAAGCACCCTGTTTACAGAGGAGTCCGAATAAGGGCTTGGGGCAAGTGGGTCTCCGAAATCCGAGAGCCCAAGAAGAAGAACCGGATCTGGTTAGGAACCTATGCTACTCCAGAAATGGCCGCTCGAGCACATGATGTCGCAGCAATGAGTATCAAAGGCAACTCTGCCATACTCAACTTTCCCGACATCGCCAGTTCGTTGCCCCGACCCGCTTCTAACTCACCTCGAGATGTTCAAGCTGCAGCTGCAAAAGCAGCTTCAATGGAGATATTCAATCAGCATACAACGCCTTCTTCTTCGTCTTCGTCCTCATCTTCATCTTCTCTGATAAAGCAATCAGCTTCATCGTCTTCATTGGAGGTGTCTTGCTCCGGTGACCCGGCAACCCCTGAAGAACTAGGTGAGATAGTGGAGTTGCCAAGCTTAACGAGTTTTGAGTCGACCGGGTCCAGCAACGAGTTCGTATTTGTTGACTCGGTAGATGGTTGGCTGTATCCTCCGCCATGGTATCACAGCATTGATAACACTGAGGACTGTTGTGGTTATTTCATGAGTGATCAGCTATCAATGCAAGAACTCGAAAATGTCAAGTCCTGTAGTTTTGAAGGTTCATTATGGCAACATTGA 858 0.4825 MPNSETDTSTNRTSSSSSYGSHFISSPSPSTSSSSTTVSGSAQSTKVDPVPNPLLAVRDGLPEPDPKKPAKRTRDDSKHPVYRGVRIRAWGKWVSEIREPKKKNRIWLGTYATPEMAARAHDVAAMSIKGNSAILNFPDIASSLPRPASNSPRDVQAAAAKAASMEIFNQHTTPSSSSSSSSSSSLIKQSASSSSLEVSCSGDPATPEELGEIVELPSLTSFESTGSSNEFVFVDSVDGWLYPPPWYHSIDNTEDCCGYFMSDQLSMQELENVKSCSFEGSLWQH* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00017 285 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Pte16g00017 285 MobiDBLite consensus disorder prediction 61 82 - -
Pte16g00017 285 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Pte16g00017 285 FunFam Ethylene-responsive transcription factor 2 80 139 - -
Pte16g00017 285 MobiDBLite consensus disorder prediction 1 48 - -
Pte16g00017 285 MobiDBLite consensus disorder prediction 1 82 - -
Pte16g00017 285 CDD AP2 82 139 IPR001471 GO:0003700|GO:0006355
Pte16g00017 285 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
Pte16g00017 285 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Pte16g00017 285 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Pte16g00017 285 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Pte16g00017 285 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 226 - -
Pte16g00017 285 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00017 Pte-Chr16 265686 267188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00017 67 262 AP2-EREBP Transcription Factor Family AT5G11590 59.296 1.33e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte16g00017 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00017 K09286 - qsa:O6P43_003984 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00017 16 265686 267188 Pte16g00017 16 265686 267188 RCT