LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte16g00004	ATGTCGTGGCAGACTTACGTCGATGATCATCTCATGTGCGATATTGAAGGCAACCATCTCTCTGCTGCTGCTATTATTGGCCACGATGGCAGCGTTTGGGCCAAGAGCTCCACTTTCCCTCAATTGAAGACTGAGGAAATACATGGAGTCATGAATGACTTTGCGGAACCTGGGTCACTTGCTCCCACTGGATTATATCTTGGTGGCACAAAATATATGGTGATCCAAGGAGAGCCGGGAGCTGTTATTCGAGGCAAGAAGGTGATGAATGTCTCAGTCGGGTGTTGA	288	0.4826	MSWQTYVDDHLMCDIEGNHLSAAAIIGHDGSVWAKSSTFPQLKTEEIHGVMNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKVMNVSVGC*	96

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte16g00004	95	Pfam	Profilin	1	87	IPR005455	GO:0003779
	Pte16g00004	95	ProSitePatterns	Profilin signature.	1	8	IPR027310	GO:0003779
	Pte16g00004	95	PRINTS	Plant profilin signature	71	80	IPR005455	GO:0003779
	Pte16g00004	95	PRINTS	Plant profilin signature	27	40	IPR005455	GO:0003779
	Pte16g00004	95	PRINTS	Plant profilin signature	52	66	IPR005455	GO:0003779
	Pte16g00004	95	PRINTS	Plant profilin signature	1	14	IPR005455	GO:0003779
	Pte16g00004	95	SMART	prof_2	1	95	IPR005455	GO:0003779
	Pte16g00004	95	Gene3D	Dynein light chain 2a, cytoplasmic	1	95	-	-
	Pte16g00004	95	CDD	PROF	2	87	IPR005455	GO:0003779
	Pte16g00004	95	PRINTS	Profilin signature	21	30	IPR005455	GO:0003779
	Pte16g00004	95	PRINTS	Profilin signature	64	78	IPR005455	GO:0003779
	Pte16g00004	95	PRINTS	Profilin signature	3	12	IPR005455	GO:0003779
	Pte16g00004	95	PRINTS	Profilin signature	40	60	IPR005455	GO:0003779
	Pte16g00004	95	SUPERFAMILY	Profilin (actin-binding protein)	2	87	IPR036140	-
	Pte16g00004	95	PANTHER	PROFILIN	1	89	IPR005455	GO:0003779

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte16g00004	Pte-Chr16	122739	125909	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte16g00004	1	95	Cytoskeleton Gene Families	AT5G56600	71.579	2.82e-50	152

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte16g00004	K05759		-	qsu:111995052	172.17