Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02402 ATGGGTTTGCGATATATTTCAATATCAGCAGTCAGTACGGTGCTGAGCTTTGTGGGACTGCAAATTTGCGCGGAGCTATCCTTAGATAAACTCCGATCAGATGGATTAATTGCTGACAATTTCATCAACACGGAGAATGCTGGCCATGCCATTCAGTTGCTATTAGGGTCTTATGGAACCGTAGGATTGCTGGCGTTTATGTTGATCAATGTATTTGTCCTACTAATTCTTTGCCTTAAGACTATATTCTTTTCAGAGTTGTACTCCTCTGAAACTCGGAAACTGGTGGAGCGTCTGATAAATTATGTTATCTACAAGGGAACATTTTTACCTCTTGTTGTGCCACCAACAGTTTACCATGCTGGCTTGTGGTCAATTTGGTTGAGTGTGGTGTGCTCTTTAAAGATGTTTCAAGCCTTGGCAAGAGATCGATTGGAGAGATTGAATGCCTCACCATCAGCCACACCTTGGACATATTTTCGTGTGTTTTCAGCATTGCTATTTGTTCTATCTGTTGACTTTTTCTGGATAAGGCTGTGTATGGCGATTTACAGAGCACTTGGCTCATCAATGTTTCTGTTGCTGTTCTTTGAGCCCCTCAGTATTGCTTTTGAGACACTGCAGGCCATTTTGGTGCATGGATTTCAGTTGCTTGATATATGGCACCATCAGTCAGTAGAAAACAGCACTGAGTGTCAAAGGTCCAAATTTCTTGATTTTTCCAAAGCAGGATCATTATCGGAATTGAAAGGCGTTCTCATTCGAAATGTTGGTTTTTCCCTTGATATGGCAACATTGTTAATGGCACTTGGTCATTACCTGCATATTTGGTGGCTTCACGGCATGGCATTCCATCTCATCGATGCAGTCCTATTTTTGAACATACGTGCATTGTTAAGTGCAATTTTTAAGCGTGTTAGAGGTTTTTTGAAGTTGCGAAGAGCACTTAGTACTCTTCATGCAGCTCTTGTTGATGCAACATCTGAGGAATTACAAGCATATGATGATGAGTGTGCTATCTGCAGGGAACCTATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTTTTCCATCTTTCATGTTTAAGATCGTGGTTGGATCAAGGTCTGAATGGGGTTTATACGTGCCCAACTTGTCGTAAGCCACTTTTTGTGGGTCGACCTGAAAATGAGGCTAGTGGGGAGATCTCAAGTGACGAGCAGCTCGCTCGACAGATAAGTGCAGGAGCAGATCATCAAAACACTGCTAGGCAGCAACTGCCAACTGGATTGTTTCCTAATCAGACACAGAATCCTACCGATGGTGTTCATTGGAGGGGTGCAGGGATGGACTCTGGCTGGTTGCATTCGTGGCCCAGTCAAGGTGTTGACGGGGCTGGCCCTTCTACTGCTACGAGGTCAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCAGCTGTTGGAGAAACATATGCCCAGACTGCCCTTGAGGATGCCTCCTGGGGTCTTTGGCCTATTGATCCTTCTCAGGCATCTGGAACTGGAACACCTGTTCCTTCTGCCACTGGAAGAGTGCCTATGCGGACGATGGCAGGTGTTGCAGGTGGTAACATAGCAAACATTCTAGCTATGGCAGATACAGTTAGGGAGGTACTTCCTCATATACCAGATGATCTGATCTTCCAGGACTTGCAACGAACAAATTCCGTGACAGTTACTGTGAATAATCTTCTCCAGATGTGA 1731 0.4437 MGLRYISISAVSTVLSFVGLQICAELSLDKLRSDGLIADNFINTENAGHAIQLLLGSYGTVGLLAFMLINVFVLLILCLKTIFFSELYSSETRKLVERLINYVIYKGTFLPLVVPPTVYHAGLWSIWLSVVCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLSVDFFWIRLCMAIYRALGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWHHQSVENSTECQRSKFLDFSKAGSLSELKGVLIRNVGFSLDMATLLMALGHYLHIWWLHGMAFHLIDAVLFLNIRALLSAIFKRVRGFLKLRRALSTLHAALVDATSEELQAYDDECAICREPMAKAKKLNCNHLFHLSCLRSWLDQGLNGVYTCPTCRKPLFVGRPENEASGEISSDEQLARQISAGADHQNTARQQLPTGLFPNQTQNPTDGVHWRGAGMDSGWLHSWPSQGVDGAGPSTATRSVGLGRVQMMMRHLAAVGETYAQTALEDASWGLWPIDPSQASGTGTPVPSATGRVPMRTMAGVAGGNIANILAMADTVREVLPHIPDDLIFQDLQRTNSVTVTVNNLLQM* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02402 576 FunFam E3 ubiquitin protein ligase RIN2 535 575 - -
Pte15g02402 576 Pfam CUE domain 540 576 IPR003892 GO:0043130
Pte15g02402 576 Coils Coil 570 576 - -
Pte15g02402 576 SMART ring_2 338 379 IPR001841 -
Pte15g02402 576 Pfam Ring finger domain 336 380 IPR001841 -
Pte15g02402 576 SUPERFAMILY RING/U-box 322 386 - -
Pte15g02402 576 CDD CUE_RIN3_plant 537 574 IPR035667 -
Pte15g02402 576 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Pte15g02402 576 Gene3D - 535 575 - -
Pte15g02402 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 387 IPR013083 -
Pte15g02402 576 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 4 576 - -
Pte15g02402 576 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Pte15g02402 576 ProSiteProfiles CUE domain profile. 536 576 IPR003892 GO:0043130
Pte15g02402 576 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02402 Pte-Chr15 34105724 34112491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02402 67 394 C3H Transcription Factor Family AT3G16090 28.863 2.75e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02402 K10636 - cave:132180827 915.99