Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02397 ATGAAAAGGAAGACAAATGTTCATGAGATGGACCAAACAAAGAATGATCATGATCATGATCATGATCACGTAAGTAAAGGGAAACTGAGAATTGGACAGCAGCAACGTCAATATCATAGGATTGTTGAAATGAGGAGACAACAAAAGTTGGATGGTACATACATTAAGAAAGGGCCATGGACTGCTGAGGAAGATGAGGTACTTGTCAATCATGTCGAGAAACATGGTCCCAGAGAATGGAGCTCTATTCGATCCAGTGGGTTGTTGCCAAGAACAGGGAAATCTTGCCGTCTCAGATGGGTTAATAAGCTCAGACCCAACTTGAAAACTGGTTGCAAGTTTTCGGCAGAAGAAGAAAGGATGGTTGTGGAATTGCAGGCACAATTTGGGAACAAATGGGCGAAAATCGCGACACATTTACCAGGAAGAACTGACAATGATGTCAAGAATTTCTGGAGTAGCAGAAGAAAAAGGCTTGAAAGGACTCATCAAAAATCATCACCGTCCAAGTCACTGAGAAACAAAGGGAAAAGCCCTGTTACCCTTCACTCCACAGCCAATGATGTGATGAATTCTGCTGTTATCAACGAGGCATCTCCATGCAGCTCAAAATTGACAAAGCAAGAGGTTGTATCAAGCGACAAGTACTTCTCCGATGCGCCAACTCAACAAGGAGGCTCCAATGAATTCAAAATGATCTCGTTACCTGACTTGATAAAGCCAAGTTCTATTAGTTTTGAAACAAACACAAATATCTTAGAGCCTATACCACTTGATGTGATACCAACTCTGGATCCTTTATTAGATTACCACTCAACTCAATTCCTTGAACCAAAGCTAGAATTCCCACCACCATTGCCGGAAACCTTTGATCCCTGCTTCTTTGACTTGTTTGGAAGCAGTCAGAAATTCAAGACCGGGGTGGAAGGAAATATTCAAAATGTCAAGCAAGATCAAAGTGAATTCCTGCCGAATCCAGATACGTTTTTGGACGACCTTCCAAACGACATGTTTGATTGCTTTGAACATCTTCCAACCTCATTTGAACCATGA 1053 0.4169 MKRKTNVHEMDQTKNDHDHDHDHVSKGKLRIGQQQRQYHRIVEMRRQQKLDGTYIKKGPWTAEEDEVLVNHVEKHGPREWSSIRSSGLLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERMVVELQAQFGNKWAKIATHLPGRTDNDVKNFWSSRRKRLERTHQKSSPSKSLRNKGKSPVTLHSTANDVMNSAVINEASPCSSKLTKQEVVSSDKYFSDAPTQQGGSNEFKMISLPDLIKPSSISFETNTNILEPIPLDVIPTLDPLLDYHSTQFLEPKLEFPPPLPETFDPCFFDLFGSSQKFKTGVEGNIQNVKQDQSEFLPNPDTFLDDLPNDMFDCFEHLPTSFEP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02397 350 FunFam MYB transcription factor 57 109 - -
Pte15g02397 350 MobiDBLite consensus disorder prediction 1 29 - -
Pte15g02397 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 100 IPR017930 -
Pte15g02397 350 MobiDBLite consensus disorder prediction 169 183 - -
Pte15g02397 350 CDD SANT 59 104 IPR001005 -
Pte15g02397 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 160 IPR017930 -
Pte15g02397 350 Gene3D - 112 181 - -
Pte15g02397 350 Gene3D - 56 109 - -
Pte15g02397 350 PANTHER TRANSCRIPTION FACTOR DUO1 44 347 - -
Pte15g02397 350 CDD SANT 113 152 IPR001005 -
Pte15g02397 350 ProSiteProfiles Myb-like domain profile. 52 104 IPR001005 -
Pte15g02397 350 MobiDBLite consensus disorder prediction 155 183 - -
Pte15g02397 350 Pfam Myb-like DNA-binding domain 60 119 - -
Pte15g02397 350 MobiDBLite consensus disorder prediction 1 36 - -
Pte15g02397 350 SMART sant 110 158 IPR001005 -
Pte15g02397 350 SMART sant 56 106 IPR001005 -
Pte15g02397 350 SUPERFAMILY Homeodomain-like 55 152 IPR009057 -
Pte15g02397 350 FunFam Transcription factor GAMYB 112 180 - -
Pte15g02397 350 ProSiteProfiles Myb-like domain profile. 113 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02397 Pte-Chr15 34040755 34042298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02397 55 346 MYB Transcription Factor Family AT3G60460 41.925 1.99e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g02397 Myb_DNA-bind_6 4.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02397 K09422 - qsa:O6P43_029817 302.367