Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02372 ATGGATGCACTCACATCGAACCATAACCTAACACCCGTGGAAACCTTAGACCCCACTCAAGCCTCCTCACATGAACAATCTTCATACTACCAGTTTCAGAACGCGCAGCCGTCGGAACAACCGCCTGTACCCTTGGGTAATGAAAACCCATCGAAAACTGTAATTTTTTACGGTCAGAACAATAACCATGACGTTGGTCATGAATCTGAATCGAAGCCATCTGATAATTCATTGAAGCCCGAGCTCCCGAGACCATTGTTGTCGGAGAATGGATTCACGGTTACGAATACCCAGAGCGGTACTGATAGGGATCAGTCTGGTGGTGAGGAGGAGACAACAAGTAGGAGGCGAAGGAGGAGTCGTTGGGACCCACAGCCGGAATCGAATGACCAGAACGGTGCTGGTGGCGGCGGTGAAGCTGGTAGTGGAACAAAGAAGAGAAAGTCAAGATGGGCTGATGATGAGCCAAAACCAGTAATTCAGCTTCCTGATTTTATGGGCGGTATTGAATTTGATCCTGAAATACAAGCTTTGAATAGTAGGTTACTTGAGATTAGTAGGATGTTACAATCTGGTTTGCCTCTAGATGATCGTCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTTTATATGATAATATGGGAATTAGGATTAATACTCGGGAGTATCGTGCTCGAGAGAGATTGCAAAAGGAGAGGCAAGAAATTATTTCTCAGATTTTGAAGAAAAACCCTGCTTTTAGGCCTCCTGCTGATTATAGGCCACCAAAGCTTCATAAGAAGCTCTATATACCAATGAAGGAGTATCCTGGATACAACTTCATAGGCCTTATTATTGGACCCAGGGGAAATACCCAGAAGCGGATGGAGAAAGAAACTGGTGCCAAAATTGTTATCAGGGGCAAAGGATCGGTGAAGGAGGGTAGATTGCAACAGAAGCGGGATTTGAAACCTGATCCTTCGGAGAATGAGGATTTACATGTTTTGGTTGAGGCGGAGACTCAGGAATCACTAGATGCTGCTGCAGGTATGGTAGAGAAGCTCTTACAACCTGTGGATGAGGTTTTAAATGAGCATAAGAGGCAACAACTTCGGGAGCTTGCAGCTCTTAATGGGACAATTAGGGATGAGGAGTACTGTCGGTTGTGTGGTGAGCCAGGTCATCGTCAGTATGCTTGTCCCACCCGTACTTCTACATTCAAGAGTGAAGTTGTATGCAAGTTTTGTGGAGATGGTGGTCATCCAAGCATTGACTGTCCAGTTAAGGGTGCAACCGGTAAGAAGATGGATGACGAGTATCAAAACTTCTTGGCTGAGTTAGGAGGGACAGTTCCTGAATCAGCCACAAAGCAAAGTAGCACATTGGCAATTGGTTCAGGTAGTTCTGGGAGTAATCCACCTTGGTCTAACAATTCCAGTTCTGCAAGCAGTACGCCACAACCTGGTTTAGGGGCCCCTGGAATAAAGAAGGAAATCGATGATACAAATCTGTATATTGGGTATTTGCCTCCGACTCTTGAGGATGATGGGTTGATTCAGTTGTTTCAGCAATTTGGTGAGATTGTGATGGCCAAAGTTATTAAGGACCGTGCAACCAATCTGAGTAAAGGTTATGGTTTTGTCAAGTATGCTGATATCCAAATGGCCAATAATGCTATTATGGCTATGAATGGTTATCGACTTGAAGGACGGACTATAGCAGTGAGAGTTGCTGGCAAACCACCTCAGCCAACTGTACCTCCTGGTCCTCCAGCATCTGCATTGGCACCGACGTATCCTGTTGCAAGCCAAGCAGTTGCGGCATATCCATCTCAGCAATATGCGGCTGGTGGTCCCCTAGGGACTGCACCTCGTCCAGGTTATACCGGTGCACCTGTTTCATGGGGCCCTCCCGTTCCTCCTCCTTATGCTGCGTATCCTCCTCCCCCACCTGGGTCAACTATGTATCCTAGTGGACAAGGTCAACCTATGCCTCCATACGGCGTTTAA 1989 0.4661 MDALTSNHNLTPVETLDPTQASSHEQSSYYQFQNAQPSEQPPVPLGNENPSKTVIFYGQNNNHDVGHESESKPSDNSLKPELPRPLLSENGFTVTNTQSGTDRDQSGGEEETTSRRRRRSRWDPQPESNDQNGAGGGGEAGSGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPLYDNMGIRINTREYRARERLQKERQEIISQILKKNPAFRPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKFCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQSSTLAIGSGSSGSNPPWSNNSSSASSTPQPGLGAPGIKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRATNLSKGYGFVKYADIQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASALAPTYPVASQAVAAYPSQQYAAGGPLGTAPRPGYTGAPVSWGPPVPPPYAAYPPPPPGSTMYPSGQGQPMPPYGV* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02372 662 SMART kh_6 258 350 IPR004087 GO:0003676
Pte15g02372 662 FunFam splicing factor-like protein 1 475 577 - -
Pte15g02372 662 FunFam splicing factor 1 378 431 - -
Pte15g02372 662 Gene3D - 172 250 IPR047086 -
Pte15g02372 662 MobiDBLite consensus disorder prediction 1 64 - -
Pte15g02372 662 MobiDBLite consensus disorder prediction 89 103 - -
Pte15g02372 662 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 495 573 IPR000504 GO:0003723
Pte15g02372 662 MobiDBLite consensus disorder prediction 447 487 - -
Pte15g02372 662 ProSiteProfiles Type-1 KH domain profile. 273 345 - -
Pte15g02372 662 FunFam splicing factor-like protein 1 250 378 - -
Pte15g02372 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 258 384 IPR036612 GO:0003723
Pte15g02372 662 MobiDBLite consensus disorder prediction 1 161 - -
Pte15g02372 662 MobiDBLite consensus disorder prediction 632 662 - -
Pte15g02372 662 Gene3D - 378 431 - -
Pte15g02372 662 CDD KH-I_BBP 257 350 - -
Pte15g02372 662 SMART rrm1_1 496 569 IPR000504 GO:0003723
Pte15g02372 662 Gene3D - 445 578 IPR012677 -
Pte15g02372 662 ProSiteProfiles Zinc finger CCHC-type profile. 380 394 IPR001878 GO:0003676|GO:0008270
Pte15g02372 662 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 497 566 IPR000504 GO:0003723
Pte15g02372 662 MobiDBLite consensus disorder prediction 632 649 - -
Pte15g02372 662 SUPERFAMILY Retrovirus zinc finger-like domains 376 422 IPR036875 GO:0003676|GO:0008270
Pte15g02372 662 PANTHER RNA-BINDING PROTEIN RELATED 104 617 IPR045071 -
Pte15g02372 662 Pfam Splicing factor 1 helix-hairpin domain 147 254 IPR032570 -
Pte15g02372 662 SUPERFAMILY RNA-binding domain, RBD 492 583 IPR035979 GO:0003676
Pte15g02372 662 SMART c2hcfinal6 405 421 IPR001878 GO:0003676|GO:0008270
Pte15g02372 662 SMART c2hcfinal6 379 395 IPR001878 GO:0003676|GO:0008270
Pte15g02372 662 MobiDBLite consensus disorder prediction 303 323 - -
Pte15g02372 662 Gene3D K Homology domain, type 1 255 377 IPR036612 GO:0003723
Pte15g02372 662 MobiDBLite consensus disorder prediction 192 213 - -
Pte15g02372 662 MobiDBLite consensus disorder prediction 143 157 - -
Pte15g02372 662 MobiDBLite consensus disorder prediction 104 125 - -
Pte15g02372 662 Pfam KH domain 273 321 IPR004088 GO:0003723
Pte15g02372 662 MobiDBLite consensus disorder prediction 447 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02372 Pte-Chr15 33780936 33786564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02372 495 626 Eukaryotic Initiation Factors Gene Family AT3G16380 30.435 9.62e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02372 K13095 - gmx:100800982 967.992