LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte15g02364	ATGTCAGAAATTCGCGAGCCTCGCAAGAAATCTCGTATCTGGCTCGGTACTTTTGCGACAGCAGAAATGGCTGCAAGAGCGCATGATGTTGCTGCTCTGAGCATTAAAGGTAACTCTGCAGTTCTAAATTTTCCGGACATAGCTGAGTTGTTGCCAAGACCAGTTTCCTTAACCCCACGTGACATCCAAGCTGCTGCTTCAGCTGCAGCTGCAATGGTCACATTTGATCTAGTACAATCATCCTCCTCATCATCGTTGTCGTCTTTGTGGATCTCAGAAGCATCAGAGTCAGAAGGGTTGGATGAAATTGTTGAGTTGCCAAATATAGAAGGCAGTCTTGACTCAGAAGATTCAGGAAATGAGTTCATCATGATGGACGACACAGGAGACTGGTGGGTGTATCCACCCATGGTGCTAGAGGACGACGCTGAATTGTGTTGTGATTTCTTTGAGCCGCTGTCAACAGTTCAACGCTCAAATAATCCAGGCAAACATGAAAGACAAGTTTGA	510	0.4588	MSEIREPRKKSRIWLGTFATAEMAARAHDVAALSIKGNSAVLNFPDIAELLPRPVSLTPRDIQAAASAAAAMVTFDLVQSSSSSSLSSLWISEASESEGLDEIVELPNIEGSLDSEDSGNEFIMMDDTGDWWVYPPMVLEDDAELCCDFFEPLSTVQRSNNPGKHERQV*	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte15g02364	169	Pfam	AP2 domain	8	37	IPR001471	GO:0003700\|GO:0006355
	Pte15g02364	169	ProSiteProfiles	AP2/ERF domain profile.	1	45	IPR001471	GO:0003700\|GO:0006355
	Pte15g02364	169	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	2	113	-	-
	Pte15g02364	169	SMART	rav1_2	2	51	IPR001471	GO:0003700\|GO:0006355
	Pte15g02364	169	CDD	AP2	2	46	IPR001471	GO:0003700\|GO:0006355
	Pte15g02364	169	Gene3D	AP2/ERF domain	1	46	IPR036955	GO:0003700\|GO:0006355
	Pte15g02364	169	SUPERFAMILY	DNA-binding domain	2	46	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte15g02364	Pte-Chr15	33641192	33641701	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte15g02364	1	146	AP2-EREBP Transcription Factor Family	AT5G25810	57.692	3.05e-41	136

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pte15g02364		AP2	1.7e-06	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte15g02364	K09286		-	qsa:O6P43_027735	191.045