Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02348 ATGGGGAGATCACCGAGCTGCGATGAAAATGGCTTGAAGAAGGGGCCATGGACTCCCGAAGAAGATGGAAAGCTGGTTAGTTACATTCAGAAACATGGACATGGGAGTTGGAGAGCACTGCCAAAGCTTGCAGGACTCAATAGATGTGGCAAGAGTTGCAGACTGAGGTGGACTAACTATCTAAGGCCAGACATCAAAAGGGGAAAGTTCACTGAAGAAGAATCTCAGATCATCATCAACTGGCACAGTATCCTTGGGAACAAGTGGTCAGCTATAGCAAGTCATCTTCCAGGAAGGACTGATAATGAAATCAAGAATTTTTGGAACACTCATCTAAGAAAAAAGCTGCTTCAGATGGGAATTGACCCAGTGACTCACAGGCCAAGGACAGACCTCAATTTTCTTGCTAATCTTCCACAGTTGCTAGCTGCTGCTAACATAGCCAACTTTACGAACCCTTGGGACAATGCTCTCATCAGCATGCTTCAGTCAGATGCCACACAACTTGCCAAAATCCAGTCTTTGCATAATATACTTCAGGTCCTAAACATGAATGTTACAACTCCAGCAAATTGGGAAACCCTAAATTCTTTTGGATCCTCTTCAATCACAGGCACTCAACTGTATCATGAACTTCCAAGAGTGATCTCTTCCAAGCATGAAGGCCATCAAAAAAGTTCCATTAATGCTTGTCCTATAAATCACATTGAGACTGACATTACCAACTTTCAAACAGTACTTCAGCAGTCTGCAGCAAAACCATCTACTGATCATCAAATCGATCCGAAGGATGAAAATCTTACCAATGCATATCCAATTTCACTACCAATTTTGGTTCCAGCTTCAACTGAACGACCCGCAGTTAAGGAAATAGAAAACAAGATTTCTTCAACAGATTTATCTAATCCTTCTTCCACTTCAACCACTTTAGATAGGTGGGAAGACTTCATGGATGACGAAGCAAGTGACTCTTACTGGAAAGATCTCATAGATCAACAAACTTCGCAGCCATGGTGA 1017 0.4228 MGRSPSCDENGLKKGPWTPEEDGKLVSYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEESQIIINWHSILGNKWSAIASHLPGRTDNEIKNFWNTHLRKKLLQMGIDPVTHRPRTDLNFLANLPQLLAAANIANFTNPWDNALISMLQSDATQLAKIQSLHNILQVLNMNVTTPANWETLNSFGSSSITGTQLYHELPRVISSKHEGHQKSSINACPINHIETDITNFQTVLQQSAAKPSTDHQIDPKDENLTNAYPISLPILVPASTERPAVKEIENKISSTDLSNPSSTSTTLDRWEDFMDDEASDSYWKDLIDQQTSQPW* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02348 338 CDD SANT 69 112 IPR001005 -
Pte15g02348 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte15g02348 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte15g02348 338 CDD SANT 16 61 IPR001005 -
Pte15g02348 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte15g02348 338 MobiDBLite consensus disorder prediction 293 314 - -
Pte15g02348 338 Gene3D - 69 116 - -
Pte15g02348 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte15g02348 338 MobiDBLite consensus disorder prediction 294 311 - -
Pte15g02348 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 281 - -
Pte15g02348 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte15g02348 338 SMART sant 66 114 IPR001005 -
Pte15g02348 338 SMART sant 13 63 IPR001005 -
Pte15g02348 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte15g02348 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte15g02348 338 Gene3D - 13 66 - -
Pte15g02348 338 FunFam Transcription factor MYB39 69 130 - -
Pte15g02348 338 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02348 Pte-Chr15 33510581 33512457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02348 1 331 MYB Transcription Factor Family AT5G16770 53.521 2.23e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g02348 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02348 K09422 - qsu:112006609 411.764