Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02318 ATGAGTGGTAATGGCAGCTTGCACAAATTACAACCATCTGGAAGTGCACAGACTTCAGGTTTCTTCAAAACCATTCGTCCCTCTGTCGTAGAAGAAAATAAAATGGCAATTTCTACAAGGTTTGTGCATGAATTTGGTGAAGAGCTGTTCCAGATTGCTACAATCACCTTAGATGATGGGTTTGTATGGAAAATTGGGTTGGATAGACATGAGAATAAGATTTTCTTCTCCCATGGTTGGAAGCAGTTCATGGAGTACTACTCCATAGAATGTGGTCAGTTTCTGTTCTTCAAATATGAAGGGAAGTCACAGTTCCATGTTCATATATGTGGCAAGACTACATTCTTTGTAGATTTACCTTCTCAAGGTCCTCATAGAAATTATGAAACTGAAGATCAACCTATTCTCAGAAATTGTTCTTCTGCGCATCATCGGAAACATGTGAAAAAGGAAGATGTCACGGAAATTTCAGAACCTTCGGCGAAAACTAGTCATAAATCAAAATGCAAAGGCAGCACTAGGACAAGAGCATTTGAAGCTGCCAGAAAGTTCAAGTCAGCAAATCTTAATTGCATGCTAGAAATGAAGTCATATTGCTCAAAAACAATTGTTGGTCCTTACTTCCCGGCCTCCTTTGCCAATCATCTGAGAACAGCTCGAGTTATCCAACTCCAAACTTCTGGATCCGACAGACAGTGGCAAGTTTTCCTGAAAATTGGTCTGAAAGGAGGGATGCGATTGTTAAGGGGATGGTCATCATTTTCAAAGGACAACAATTTGGAGGACGGAGATGTCTGTATCTTTGAGTTCATACATGGGGAGGTGCCAGTTCTGAAAGTTCAAATCTTTCGGAATGCATAG 861 0.4042 MSGNGSLHKLQPSGSAQTSGFFKTIRPSVVEENKMAISTRFVHEFGEELFQIATITLDDGFVWKIGLDRHENKIFFSHGWKQFMEYYSIECGQFLFFKYEGKSQFHVHICGKTTFFVDLPSQGPHRNYETEDQPILRNCSSAHHRKHVKKEDVTEISEPSAKTSHKSKCKGSTRTRAFEAARKFKSANLNCMLEMKSYCSKTIVGPYFPASFANHLRTARVIQLQTSGSDRQWQVFLKIGLKGGMRLLRGWSSFSKDNNLEDGDVCIFEFIHGEVPVLKVQIFRNA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02318 286 PANTHER B3 DOMAIN-CONTAINING 15 274 - -
Pte15g02318 286 CDD B3_DNA 21 110 IPR003340 GO:0003677
Pte15g02318 286 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Pte15g02318 286 Pfam B3 DNA binding domain 207 285 IPR003340 GO:0003677
Pte15g02318 286 SUPERFAMILY DNA-binding pseudobarrel domain 17 112 IPR015300 -
Pte15g02318 286 SUPERFAMILY DNA-binding pseudobarrel domain 204 284 IPR015300 -
Pte15g02318 286 Gene3D - 170 286 IPR015300 -
Pte15g02318 286 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Pte15g02318 286 ProSiteProfiles B3 DNA-binding domain profile. 208 286 IPR003340 GO:0003677
Pte15g02318 286 SMART B3_2 21 113 IPR003340 GO:0003677
Pte15g02318 286 SMART B3_2 191 286 IPR003340 GO:0003677
Pte15g02318 286 Gene3D - 14 114 IPR015300 -
Pte15g02318 286 CDD B3_DNA 207 284 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02318 Pte-Chr15 33205390 33206660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02318 161 284 B3 DNA Binding Superfamily AT3G18990 28.800 1.75e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte15g02318 B3 1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02318 - - qsu:112013466 174.481