Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02308 ATGGTAATTTGCAGCTCACCCTTCAGTATGGATGGCATTAATGGGGGCGATACGCGAATGCACATGACTGATGCTCAGCATCCGATGAATATGCAGTACTTGCAGGGGCACGAACATCATGGGTTACATCATATGACAAATGGGAATGCTTTGGATGATGATCATAACAGCGTCAGTGCTGAGGGAAGTGAGGGGATGGAAGAGGATGTCCCATCCAGCGTGGGAAATCTTCCTGACAACAGCACTGCCATTATTGAAGGCAATGACAATGCAGATCAATTGACATTGTCCTTCAAGGGACAGGTCTATGTATTTGATTCTGTGTCACCGGAAAAGGTTCAAGCTGTCTTATTACTTTTAGGGGGCCGCGAAATGCCTCCAACTACAAGTGCTATGCCAATATCCTGTCAACACAGCAACAGGGTTCTTGCTAGTACTCCACAAAAGTACAGTGTTCCGCATAGATTGGCCTCATTAATTAGATTTCGAGAAAAGAGGAAAGACCGGAACTTTGACAAGAAAATCCGTTACACTGTCCGGAAGGAGGTAGCCCTGAGGATGCAAAGAAATAAGGGTCAATTTACATCTTCAAAGTCTAATCACGATGAACCATCGCCGGCGGCCAATTGGGGCCCTAATGAGAACTGGGTATCTGATAGTGGTGGACCTCAACAAGATACCGTTTGTAAGCACTGTGGCATTAGTGACAAGTGCACACCAATGATGAGACGTGGACCTGAAGGGCCAAGAACACTGTGTAATGCATGTGGACTTATGTGGGCAAACAAGGGGACTCTGAGAGACCTCTCAAAAGCAGTACCGGCTGGACAGAACTCTGCATCCATCAGAAATGAGTTGAACAATCATGCAGAGACTAAAAATTTTGAGGCTGAGCAAGTAGCTATGACAGTGAATATCAGGAACTCGTGA 930 0.4591 MVICSSPFSMDGINGGDTRMHMTDAQHPMNMQYLQGHEHHGLHHMTNGNALDDDHNSVSAEGSEGMEEDVPSSVGNLPDNSTAIIEGNDNADQLTLSFKGQVYVFDSVSPEKVQAVLLLLGGREMPPTTSAMPISCQHSNRVLASTPQKYSVPHRLASLIRFREKRKDRNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDEPSPAANWGPNENWVSDSGGPQQDTVCKHCGISDKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAVPAGQNSASIRNELNNHAETKNFEAEQVAMTVNIRNS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02308 309 CDD ZnF_GATA 228 271 IPR000679 GO:0006355|GO:0043565
Pte15g02308 309 SMART tify_2 87 122 IPR010399 -
Pte15g02308 309 MobiDBLite consensus disorder prediction 189 222 - -
Pte15g02308 309 ProSitePatterns GATA-type zinc finger domain. 229 256 IPR000679 GO:0006355|GO:0043565
Pte15g02308 309 SMART GATA_3 223 276 IPR000679 GO:0006355|GO:0043565
Pte15g02308 309 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Pte15g02308 309 Pfam CCT motif 155 197 IPR010402 GO:0005515
Pte15g02308 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 274 - -
Pte15g02308 309 Pfam GATA zinc finger 229 265 IPR000679 GO:0006355|GO:0043565
Pte15g02308 309 Gene3D - 221 283 IPR013088 GO:0006355|GO:0008270
Pte15g02308 309 Pfam tify domain 91 121 IPR010399 -
Pte15g02308 309 MobiDBLite consensus disorder prediction 48 74 - -
Pte15g02308 309 PANTHER GATA TRANSCRIPTION FACTOR 28 31 301 IPR045280 GO:0006355
Pte15g02308 309 ProSiteProfiles GATA-type zinc finger domain profile. 223 283 IPR000679 GO:0006355|GO:0043565
Pte15g02308 309 MobiDBLite consensus disorder prediction 188 222 - -
Pte15g02308 309 ProSiteProfiles Tify domain profile. 87 122 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02308 Pte-Chr15 33088912 33093229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02308 10 309 Tify Gene Family AT1G51600 57.419 8.62e-116 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte15g02308 CCT 1.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02308 - - pvu:PHAVU_008G254600g 418.698