Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02228 ATGGCTGCTGCGCCCAATTCTACTCCTTCATCCGCTGCCGCCGCCAACTTAAAACCCGTTTTCTTAACCAAAGCCCAAAGAGAGAAGCTAGCTCTTCAGCGCCGTCAAGAAGCCGTTGCTGACCAGAAACGCCTCCGTGAGGACCTTATCCTTTCTGCAAACCGCCCTACCCACCCTGATTCGCACGCTGCAGATGCCAATCCTCTATCATCGGATCGGGATCGTGACAGGGACAGAGACAGAGACAGAGATAGAGATAGAGATAGAGATAGGGATAGGGATAGGGATAGAGATAGAGACCGTGATGATCGTGATCGTGACCGTGACCGTGACCGCCGTAGAGACTATGAACGTGAAAGAGATAGAGAAAGAGACAGAGATAGAAAGAGGGAGAGGGAACGCGAAGAAGAGGCCAGAGCAGCAGATCGCGAGCGGGCTCGTTTGGAGAAGCTGGCCGAGCGGGAGCGTGACAAAGAACTAGAGGCCATCAAAGAGCAGTATCTGGGATCCAAAAAACCAAAGAAGAGGGTCATCAAGCCCAGCGAGAAGTTTCGCTTCTCCTTTGACTGGGAGAACACCGAAGATACTTCCCGTGATATGAACGCTCTATATCAAAACCCTCACGAGGCTCAGCTTCTCTTCGGTCGTGGTTTCCGTGCTGGAATGGACCGTCGCGAGCAGAAGAAGCTTGCGGCCAAGAATGAGAAGGAATTACGAGAGGAGATTCGTAAGAAGGAGGGCATTGAGGAGGGGCCCGAGGAGGCTGCCGCGCAACGACTCAAGGAGCAGGCTGCTGATCTCTATGATACCTTTGACATGAGGGTCGACCGCCATTGGAGCGAGAAGGGCCTTGATGAGATGACTGAGAGGGACTGGCGTATCTTCCGCGAGGACTTCAACATTTCCTACAAGGGTTCAAGGATTCCACGTCCCATGCGCAGCTGGGCAGAGAGCAAGCTCAGTGCTGAACTCTTGAAGGCCGTTGAGAAGGCTGGCTATAAGAAGCCCTCTCCTATTCAGATGGCTGCTATTCCACTTGGTCTTCAGCAACGGGATGTCATTGGCATTGCTGAGACAGGTTCAGGAAAGACTGCTGCCTTTGTTCTTCCTATGCTGTCTTATATCACCAGGCTTCCCCCTATCAGTGAAGACAATGAGGCTGAGGGCCCCTATGCAGTTGTCATGGCGCCCACCCGTGAACTTGCCCAGCAGATTGAGGACGAGACAGTTAAGTTTGCTCAGTACATGGGAATCAAGGTTGTATCCATTGTCGGTGGACAGTCCATTGAAGAGCAAGGTTTTAGGATTAGGCAGGGCTGTGAGATTGTAATTGCCACTCCTGGCCGTTTGATTGACTGCCTGGAGAGGCGTTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGATCGAATGATAGACATGGGGTTTGAGCCACAGGTTACGGGTGTATTGGATGCCATGCCTTCCAGCAATCTTAAACCAGAAAATGAAGATGAAGAGCTCGATGAGAAGAGAATTTACAGGACTACTTATATGTTTAGTGCCACGATGCCACCTGCTGTGGAGCGTCTTGCCAGGAATGCTACTGGCACTAATCTAGAAAGCCATATGTAA 1626 0.5117 MAAAPNSTPSSAAAANLKPVFLTKAQREKLALQRRQEAVADQKRLREDLILSANRPTHPDSHAADANPLSSDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDDRDRDRDRDRRRDYERERDRERDRDRKREREREEEARAADRERARLEKLAERERDKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKELREEIRKKEGIEEGPEEAAAQRLKEQAADLYDTFDMRVDRHWSEKGLDEMTERDWRIFREDFNISYKGSRIPRPMRSWAESKLSAELLKAVEKAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFRIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVTGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARNATGTNLESHM* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02228 541 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 468 476 IPR000629 -
Pte15g02228 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 532 IPR027417 -
Pte15g02228 541 FunFam probable ATP-dependent RNA helicase DDX23 274 535 - -
Pte15g02228 541 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 242 531 - -
Pte15g02228 541 Pfam DEAD/DEAH box helicase 338 528 IPR011545 GO:0003676|GO:0005524
Pte15g02228 541 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 313 341 IPR014014 GO:0003724
Pte15g02228 541 SMART ultradead3 332 540 IPR014001 -
Pte15g02228 541 Gene3D - 274 537 IPR027417 -
Pte15g02228 541 MobiDBLite consensus disorder prediction 49 145 - -
Pte15g02228 541 Coils Coil 131 161 - -
Pte15g02228 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 344 539 IPR014001 -
Pte15g02228 541 MobiDBLite consensus disorder prediction 67 145 - -
Pte15g02228 541 Coils Coil 106 126 - -
Pte15g02228 541 CDD DEADc_DDX23 324 531 - -
Pte15g02228 541 Coils Coil 225 245 - -
Pte15g02228 541 Coils Coil 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02228 Pte-Chr15 32192429 32195109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02228 314 530 Eukaryotic Initiation Factors Gene Family AT3G13920 34.101 1.05e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02228 K12858 - aew:130779364 699.893