Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02217 ATGATGACTGGTTGCAAAAAATACAACTCCCTTTACCCGAACCCACTTAACCAACTGAAAAATAGCCGCAGTTGCAGTGAAGGTGGTCGTTTGATCTCCGAAGTGGAAACAGGTGGCAGCCCCCAACTTTTAAATGATAAAGAAAATGCCGCACCAAACAACAAACAAGTTCTGGTCCCTGGGGACAAACAAAATACAGCAATTGTTAACGGCTCTTCCTCTGCTATGCCTAAACAGTTTTCAAAGGCAAAATCTTTGCCCTGTGACAGGGTCTTGAAGCCATCCTCGCTTCAGCTTTGTATGCAAATGTGTGAACCTGAAAGAGCATTTGTCTCAAAGATATGTGACTCTGCTGGGTCAGAAAATTCAAGCTCTTTGAATATCTGGGACTTTTCAGATTCAGAAGCAGCTCCAGCTTCTTCCTGGTCCACACTGCCTAACAAGTCTCTGCTGTGTAGGCCATTGCCAATTGATATAGGAAGGTGCACCTGTGTCATTGTGAAGGAAGCATTACCTGAAGGATCATATAGGGGCACTCTCTATTCCTTATACACCTACGAAGGTCAGGGTAGGCAAAACAGGAAGCTTGCTGTTGCTTACCACAGGCGGCGCAATGGAAAATCTCACTACAAGATAGCACAGAATACAAAAGGACTGGGGACCAATTCAGACAATAGTTTTCTTGGGACAATGACAGCAAACCTCGTAGGTTCGAAGTACTGCATCTGGGATAAGGTTTGCACTCTTCCGCTTGCACCTCTGAAGTCATGTAGTTTAATTTTTTTTCATATTCACAGGTTCGTGCCTACAATAACCACTTGCACAGGAAGTCACAGAAACATAAGGGCATACATACCTAAGCATCAATCCCTTCAACTGAAGAACACAGCACATGTACAACATATTAAAGGACTACCTATGGACTGGAAGGAAAATTCAGATAGAATCAATCAGTTGTTTTCAAGGGTTCCTCATTACAATAAGATCTCGAAGCAATATGAGCTTGATTACAAAGATAGAGGAAGGGCAGAGCTCAGAATTCAGAGATCAGTGAAAAATTTTCAGCTGTGCTTGGAGGAGAATGGAAAGCAGGCAGCACTGCAGCTGGGCAGGATAGCCAGGTCAAAGTTTGTGATGGATTTCAGATATCCCTTAACAGGATACCAAGCATTTTGCATTTGTTTGGCGTCTATTGATTCAAAACTTTGCTGCTCAGTGTGA 1221 0.4316 MMTGCKKYNSLYPNPLNQLKNSRSCSEGGRLISEVETGGSPQLLNDKENAAPNNKQVLVPGDKQNTAIVNGSSSAMPKQFSKAKSLPCDRVLKPSSLQLCMQMCEPERAFVSKICDSAGSENSSSLNIWDFSDSEAAPASSWSTLPNKSLLCRPLPIDIGRCTCVIVKEALPEGSYRGTLYSLYTYEGQGRQNRKLAVAYHRRRNGKSHYKIAQNTKGLGTNSDNSFLGTMTANLVGSKYCIWDKVCTLPLAPLKSCSLIFFHIHRFVPTITTCTGSHRNIRAYIPKHQSLQLKNTAHVQHIKGLPMDWKENSDRINQLFSRVPHYNKISKQYELDYKDRGRAELRIQRSVKNFQLCLEENGKQAALQLGRIARSKFVMDFRYPLTGYQAFCICLASIDSKLCCSV* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02217 406 MobiDBLite consensus disorder prediction 38 56 - -
Pte15g02217 406 Gene3D Tubby Protein; Chain A 144 405 IPR025659 -
Pte15g02217 406 Pfam Tub family 152 400 IPR000007 -
Pte15g02217 406 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Pte15g02217 406 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Pte15g02217 406 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Pte15g02217 406 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Pte15g02217 406 SUPERFAMILY Tubby C-terminal domain-like 139 404 IPR025659 -
Pte15g02217 406 PANTHER TUBBY-RELATED 20 403 - -
Pte15g02217 406 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02217 Pte-Chr15 32071336 32074548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02217 40 299 TUB Transcription Factor Family AT1G16070 50.187 1.91e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte15g02217 Tub 2.2e-35 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02217 K19600 - qsa:O6P43_017913 533.102