Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02212 ATGAAGCTTACTGTGAAAACCTTGAAAGGCAGCCACTTTCAAATTGAGGTTCAGCCCTCTCAGACTGTAATGGCTGTGAAGAAGAACATCGAAGATGCACAAGGAAAGGAATTTTATCCCTGTGGACAGCAACTATTGATTCATAATGGCAAGGTCCTGAAAGATGAGACGACGTTAGCGGATAACAAAGTTACAGAAGATGGATTTCTCGTTGTCATGCTAAGCAAGAGCAAAGTCTTAGGTTCAGCAGGGGCCTCATCTACTCAGCCCGCATTTAATCCACCTACAACTGCTCCATCTACTACCGCTTCGCCTACTACTACTACTGCAACTTCTCATTCTATTCTTGCACCTGAAGCTCCAGTACTAACTCCTGTACCTGCTGGTTCCTATGATCAAGCTGCCTCCAATTTAGTTTCTGGTAACAATCTTGAGCAGACTATTCAGCAAATCATGGATATGGGTGGAGGCAGCTGGGATAGAGAAATAGTTAGCCGTGCTCTTCGTGCAGCATTTAACAATCCCGAGAGAGCAGTAGACTACTTATATTCTGGCATTCCTGAAACAACAGAAGTTGCTGTTCCAGAGGTATGCTATCCTGCCAGTCATGTACCTGAAACAGATGCTACTGGATCAGTGTCTAGAGCACCTAATACATCTCCACTCAATATGTTTCCTCAGGAAGCACAATCTGGGGATGCTGCTGGACAGGGATCTCTCGACTTCCTTCGAGACAACCCACAGTTTCAAGCTTTGCGTGATATGGTTCAAGCAAATCCACAAATTCTACAGCCAATGCTTCAGGAGCTTGGAAAGCAGAACCCAAATCTTTTAAGATTAATTCAGCAGCACCAGACAGAATTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAAGTGATTTATTAGACCAACCTGAGCAAGAAATGCCTCATGCCATCAGTGTAACGCCTGCTGAGCAGGAGGCAATTAGAAGGCTGGAGGCTATGGGGTTTGATAGAGCCTTAGTCATTGAGGCATTTTTCGCTTGTGATCGCAATGAAGAATTGGCTGCCAACTACCTCTTGGAAAATGCTGGAGATGTTGAGGATTGA 1098 0.4463 MKLTVKTLKGSHFQIEVQPSQTVMAVKKNIEDAQGKEFYPCGQQLLIHNGKVLKDETTLADNKVTEDGFLVVMLSKSKVLGSAGASSTQPAFNPPTTAPSTTASPTTTTATSHSILAPEAPVLTPVPAGSYDQAASNLVSGNNLEQTIQQIMDMGGGSWDREIVSRALRAAFNNPERAVDYLYSGIPETTEVAVPEVCYPASHVPETDATGSVSRAPNTSPLNMFPQEAQSGDAAGQGSLDFLRDNPQFQALRDMVQANPQILQPMLQELGKQNPNLLRLIQQHQTEFLQLINEPVEGSESDLLDQPEQEMPHAISVTPAEQEAIRRLEAMGFDRALVIEAFFACDRNEELAANYLLENAGDVED* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02212 365 FunFam UV excision repair protein RAD23 homolog 312 360 - -
Pte15g02212 365 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 319 359 IPR015940 -
Pte15g02212 365 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Pte15g02212 365 MobiDBLite consensus disorder prediction 84 112 - -
Pte15g02212 365 SMART CBM 235 281 IPR006636 -
Pte15g02212 365 FunFam UV excision repair protein RAD23 homolog 137 187 - -
Pte15g02212 365 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Pte15g02212 365 FunFam UV excision repair protein RAD23 1 80 - -
Pte15g02212 365 Gene3D - 1 79 - -
Pte15g02212 365 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pte15g02212 365 Pfam XPC-binding domain 240 295 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pte15g02212 365 NCBIfam UV excision repair protein Rad23 1 363 IPR004806 GO:0006289
Pte15g02212 365 CDD Ubl_Rad23 1 74 - -
Pte15g02212 365 Gene3D - 137 187 - -
Pte15g02212 365 SUPERFAMILY UBA-like 303 362 IPR009060 GO:0005515
Pte15g02212 365 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 354 - -
Pte15g02212 365 Gene3D - 230 296 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pte15g02212 365 PRINTS DNA repair protein Rad23 signature 332 346 IPR004806 GO:0006289
Pte15g02212 365 PRINTS DNA repair protein Rad23 signature 347 362 IPR004806 GO:0006289
Pte15g02212 365 PRINTS DNA repair protein Rad23 signature 266 288 IPR004806 GO:0006289
Pte15g02212 365 PRINTS DNA repair protein Rad23 signature 315 331 IPR004806 GO:0006289
Pte15g02212 365 Gene3D - 312 360 - -
Pte15g02212 365 Pfam UBA/TS-N domain 321 356 IPR015940 -
Pte15g02212 365 Pfam UBA/TS-N domain 144 182 IPR015940 -
Pte15g02212 365 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pte15g02212 365 CDD UBA1_Rad23_plant 138 187 - -
Pte15g02212 365 SUPERFAMILY UBA-like 140 192 IPR009060 GO:0005515
Pte15g02212 365 SMART uba_6 144 184 IPR015940 -
Pte15g02212 365 SMART uba_6 321 358 IPR015940 -
Pte15g02212 365 SUPERFAMILY XPC-binding domain 236 302 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pte15g02212 365 SMART ubq_7 1 75 IPR000626 GO:0005515
Pte15g02212 365 FunFam UV excision repair protein RAD23 B 229 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02212 Pte-Chr15 32023774 32028819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02212 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 8.60e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02212 K10839 - cave:132187731 535.028