Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02087 ATGGCTAGCATGCATATGAATTGGTCCTCTGTCTTGGCAATTTGCTTAGTGGCTTCTGTCGTTCCAAACCTTTCTGCAGCCACGCAATCCAAGGCAAACAATGTAATCATCCATAGTCTTCGTATTCATCACTGCAAGGCTCAACCACCCAGTACAGTGATGGGTCCTGATGGACAAATGGTAAGTCTTGGTCCAGTGGATGGGGATGCAATCAGGTTGGTGACTGCGTCAAAGGTCTGGATAGATCATAACACTCTGTATGAGTGCGATGATGGGCTTCTTGATGTCACTCGTGGTTCCACAAATATCACAATCTCAAACAACTGGTTCAGATACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTTCCTGCGTGATAAGAACATGAAGGTGACTGTAGTGTACAACCATTTTGGACCTAATTGCAACCAACGTATGCCAAGGGTTCGCCATGGGTATGCACACGTAGCAAATAACCTGTACCAAGGTTGGCAGAAATACGCCATTGGTGGAAGCATGTCTCCTAGCATTAAAAGTGAAGCCAACCTTTTCATTGCAACCAAATCAGGAAGCAAGGAGGTTACATGGAGAAATGGGGATAAGGAAGATGTAGATTCATGGAAATTTTACTCAGTGGGGGATGTTTTTGAGAATGGTGCTGTTTTCGACCTTCAATCAGGTGTAGGTGGTGCAAAGCCTAACTACAACGAAGAACAGCTTTTCATAGTTGCAGATGCTCGACAGGTGAAGTTACTGACAAGATCATCTGGGGCTTTAAAATGCACCAAAACATCTGTATGTTGA 810 0.4444 MASMHMNWSSVLAICLVASVVPNLSAATQSKANNVIIHSLRIHHCKAQPPSTVMGPDGQMVSLGPVDGDAIRLVTASKVWIDHNTLYECDDGLLDVTRGSTNITISNNWFRYQDKVMLLGHDDGFLRDKNMKVTVVYNHFGPNCNQRMPRVRHGYAHVANNLYQGWQKYAIGGSMSPSIKSEANLFIATKSGSKEVTWRNGDKEDVDSWKFYSVGDVFENGAVFDLQSGVGGAKPNYNEEQLFIVADARQVKLLTRSSGALKCTKTSVC* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02087 269 PANTHER PECTATE LYASE 18-RELATED 29 266 IPR045032 GO:0030570
Pte15g02087 269 Pfam Pectate lyase 20 186 IPR002022 -
Pte15g02087 269 Gene3D - 21 262 IPR012334 -
Pte15g02087 269 SUPERFAMILY Pectin lyase-like 30 263 IPR011050 -
Pte15g02087 269 SMART amb_all 7 192 IPR002022 -
Pte15g02087 269 PRINTS Pollen allergen Amb family signature 147 166 IPR018082 -
Pte15g02087 269 PRINTS Pollen allergen Amb family signature 209 233 IPR018082 -
Pte15g02087 269 PRINTS Pollen allergen Amb family signature 169 188 IPR018082 -
Pte15g02087 269 PRINTS Pollen allergen Amb family signature 240 263 IPR018082 -
Pte15g02087 269 PRINTS Pollen allergen Amb family signature 67 88 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02087 Pte-Chr15 29637193 29638875 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02087 31 201 Polysaccharide Lyase AT5G09280 75.439 4.28e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02087 K01728 - qsu:112015873 393.275