Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02083 ATGGCTGAAGTAGAAGCCTCACGCTCCGAGAAGAAGAGTAAAAAGCAAACTGACGCTTCCAAAGGCTCCACTAATGTTGTTGATACTACTGATCAAACTGACTTCATCAAACCTCAGAGCTACAGTAAGCCCATTGATTCTTCTGAATGGCCATTACTCCTTAAAAACTATGATCGTCTCAATGTTCGGACCGGTCATTTCACTCCTCTTCCAACTGGGTATTCGCCACTTAAGCGCCCTCTAGCCGAGTACATAAGGTACGGTGTTCTGAACCTTGATAAGCCTTCTAACCCATCCTCACATGAAGTGGTGGCATGGATTAAGCGGATTCTAAGGGTTGAGAAAACTGGCCATAGTGGAACCCTTGATCCTAAGGTTACTGGGAATTTGATAGTTTGTATTGATAGGGCTACTAGGTTAGTTAAATCACAACAAGGCGCTGGTAAAGAGTATGTCTGTGTTGCACGTCTGCATTCTACTGTGTCTGACGTGGCTAAGGTGTCTCGGGCACTTGAGACATTGACTGGAGCAGTGTTTCAGAGGCCACCTTTGATTTCTGCTGTGAAGAGGCAGCTTAGGATAAGGACTATTTATGAAAGTAAGTTACTGGAGTTTGATCCGGTGAAGAATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGGACTTATGTTCGGACAATGTGCGTTCATTTGGGTCTTCTTCTTGGTGTTGGAGGACATATGCAGGAATTGAGGAGGGTGAGGTCTGGGATATTGGGGGAGAAGGATAACATGGTGACAATGCATGATGTGTTGGATGCTCAGTGGATGTATGATAATTATAGGGATGAGACTTATTTGAGGAGAGTTATTATGCCCCTTGAGGTGATATTGACAAGTTATAAGAGATTAGTGGTGAAAGATTCTGCTGTGAATGCCATTTGTTATGGAGCTAAGTTGATGATACCAGGATTGTTGAGGTTTGAGAATGATATTGAGGTTGGTGAAGAAGTGGTGCTCATCACCACCAAAGGTGAAGCCATTGCTTTGGGTATAGCAGAAATGACTACTGCAGTGATGGCTACTTGTGACCATGGTGTGGTTGCGAAAATTAAGAGGGTTGTGATGGATAGGGATACTTATCCACGAAAATGGGGATTGGGGCCACGTGCATCAATGAAAAAGAAGCTGATTGCAGAGGGAAAATTGACAAAACATGGGAAGCCAAATGAGAAAACTCCATCAGAGTGGGTTAGAAATATAGTTCTACCAGCAGGTGGAGATGCCGCAATTGCAGCAGCTGCTGCACAACCAGTTCTGGAGAAGGAAACCAATGTGGAGGAGAAGGGAAAGGAAAATCTAGAGGGCCAGAAGAGGAAGATGGAGAAAGAGACTGAGAGCCCTGATCCTGTTCCAAAAAAGAAAGCCAAAATGGAGAAAGTTGAAGTTGTTGAGAAGCATGAAAAGGTAGACCATAAAATGGTGAAGGAGGATGTTGTGGAGGATAAGGTTGAGAAGAAAGAAAAGAAGAAAAAAAAGAAAGATAAAGAGAACGATGGAAAGGTAATTTCTAATGAAGATAAACTGAAAAAGGAGAAGAAAAATGACATAGCTGAAGCTGTTTCTCTTAATACCGACAAGGCGGTGAAGAAGAAAAAGAAGAAAGACAAAGAGGTTGAAGATGGTGAAAGTGAAAAACCTACCAAGAGTGTCAATGGTGATGCTGGTGCTGATGCTGATGATAATGATAAGAAAAAGAAGAAAGAGAAAAAGAAGAAGAATAAAGATGCTGTCAATGACTAG 1782 0.4242 MAEVEASRSEKKSKKQTDASKGSTNVVDTTDQTDFIKPQSYSKPIDSSEWPLLLKNYDRLNVRTGHFTPLPTGYSPLKRPLAEYIRYGVLNLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSTVSDVAKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDPVKNLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGILGEKDNMVTMHDVLDAQWMYDNYRDETYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLITTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLTKHGKPNEKTPSEWVRNIVLPAGGDAAIAAAAAQPVLEKETNVEEKGKENLEGQKRKMEKETESPDPVPKKKAKMEKVEVVEKHEKVDHKMVKEDVVEDKVEKKEKKKKKKDKENDGKVISNEDKLKKEKKNDIAEAVSLNTDKAVKKKKKKDKEVEDGESEKPTKSVNGDAGADADDNDKKKKKEKKKKNKDAVND* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02083 593 Pfam DKCLD (NUC011) domain 48 104 IPR012960 -
Pte15g02083 593 MobiDBLite consensus disorder prediction 569 593 - -
Pte15g02083 593 SMART DKCLD_2 46 104 IPR012960 -
Pte15g02083 593 Gene3D PUA domain 48 378 IPR036974 GO:0003723
Pte15g02083 593 Coils Coil 490 510 - -
Pte15g02083 593 SMART pua_5 295 369 IPR002478 GO:0003723
Pte15g02083 593 ProSiteProfiles PUA domain profile. 294 369 - -
Pte15g02083 593 CDD PseudoU_synth_hDyskerin 86 268 - -
Pte15g02083 593 Pfam TruB family pseudouridylate synthase (N terminal domain) 108 224 IPR002501 GO:0006396
Pte15g02083 593 FunFam H/ACA ribonucleoprotein complex subunit CBF5 80 286 - -
Pte15g02083 593 NCBIfam uncharacterized domain 2 290 366 IPR004521 GO:0003723
Pte15g02083 593 CDD PUA_Cbf5 293 367 - -
Pte15g02083 593 MobiDBLite consensus disorder prediction 19 40 - -
Pte15g02083 593 SUPERFAMILY PUA domain-like 294 375 IPR015947 -
Pte15g02083 593 Pfam PUA domain 295 367 IPR002478 GO:0003723
Pte15g02083 593 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 10 510 IPR004802 GO:0006396
Pte15g02083 593 MobiDBLite consensus disorder prediction 435 593 - -
Pte15g02083 593 MobiDBLite consensus disorder prediction 435 561 - -
Pte15g02083 593 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 54 379 IPR004802 GO:0006396
Pte15g02083 593 MobiDBLite consensus disorder prediction 1 18 - -
Pte15g02083 593 SUPERFAMILY Pseudouridine synthase 48 292 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pte15g02083 593 Pfam tRNA pseudouridylate synthase B C-terminal domain 225 291 IPR032819 -
Pte15g02083 593 Gene3D Pseudouridine synthase 80 286 - -
Pte15g02083 593 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02083 Pte-Chr15 29602026 29605216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02083 1 470 NAC Transcription Factor Family AT3G57150 79.193 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02083 K11131 - thj:104816817 749.969