Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02078 ATGGAGTTTTGTTCGAGATGGTTCTCTGTTAGCTCAATGCTTTTTGTGGCACTGCTTTTCATTAGTGTCCAGGCACTGACTGATGACGTCCATGCCAATGTGAATGAAGTTCCTGTACGGTCAAGGTACATGGAGACAGACGAGTTGCAGTTGCAGAGCTCTGTGAATTCAACAATGGCGGAGAGGTCAAAAGATGATGAGTTGAATGGGCATGCAATTGATAATCCTGAGGAAATAGCAACCATGGTGGAAATGAAAATTCACAACAGCACAGAGAGGAGGAAGTTAGGATTCTTCTCATGTGGGAATGGTAACCCTATTGATGACTGCTGGCGCTGTGACCGGCTTTGGCACCTTCGACGAAAGCGGTTAGCTGACTGCGCCATCGGATTTGGTCGTAACGCCATTGGTGGCCGTGATGGCAAGTATTACGTTGTCAGTGATCCTGGTCATGACGATCCTGTCAACCCCAGACCAGGGACACTGCGCCATGCTGTGATTCAGGACAGACCTTTGTGGATTGTGTTCAAAAGGGACATGGTGATCACATTGAAACAAGAGTTGATTATGAACAGCTTTAAGACCATTGATGCTCGTGGTGTCAATGTGCACATAGCGTATGGTGGCTGCATTACTGTTCAATTTGTTACCAATATTATCATTCATGGCCTGCACATCCATGACTGCAAACCAACTGGCAATGCCATGGTGCGTAGCTCACCTACTCATTATGGGTGGAGGACTATGGCTGATGGAGATGGTATTTCTCTCTTTGGTGCAAGCCATGTTTGGATTGACCATAACTCACTCTCCAACTGCGCTGATGGTCTTGTTGATGCTATTATGGGATCTACTTCCATTACCATTTCTAATAACTACTTTACGCACCATAATGAGGTCATGCTATTGGGTCATAGTGACTCTTATGTGAGAGACAAGCTGATGCAAGTAACAATCGCTTACAACCATTTTGGGGAGGGTCTAATTCAAAGAATGCCAAGATGCAGACATGGTTATTTCCATGTGGTAAACAATGACTACACACATTGGGAGATGTATGCAATTGGTGGTAGTGCTAATCCCACCATAAATAGCCAGGGCAATCGATACCTTGCCCCAAATAACGCTTTTGCAAAAGAGGTGACCAAGAGGGTTGAGGATACATCAGCAAGTGTATGGAAAAACTGGAATTGGAGATCTGAAGGAGACCTATTTTTGAATGGTGCCTATTTCACATCTTCAGGAGCTGGTGCTGGAGCAAGCTATGCTAGAGCCTCAAGTTTAGCTGCCAAATCATCTTCTCAAGTTGGGACACTCACTTCTGGTGCTGGTGTGCTCAACTGTCGGAGGGGATCCATGTGTTGA 1365 0.4549 MEFCSRWFSVSSMLFVALLFISVQALTDDVHANVNEVPVRSRYMETDELQLQSSVNSTMAERSKDDELNGHAIDNPEEIATMVEMKIHNSTERRKLGFFSCGNGNPIDDCWRCDRLWHLRRKRLADCAIGFGRNAIGGRDGKYYVVSDPGHDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIAYGGCITVQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDGISLFGASHVWIDHNSLSNCADGLVDAIMGSTSITISNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPNNAFAKEVTKRVEDTSASVWKNWNWRSEGDLFLNGAYFTSSGAGAGASYARASSLAAKSSSQVGTLTSGAGVLNCRRGSMC* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02078 454 Gene3D - 104 447 IPR012334 -
Pte15g02078 454 FunFam Pectate lyase 104 447 - -
Pte15g02078 454 SUPERFAMILY Pectin lyase-like 105 445 IPR011050 -
Pte15g02078 454 SMART amb_all 179 376 IPR002022 -
Pte15g02078 454 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Pte15g02078 454 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Pte15g02078 454 PRINTS Pollen allergen Amb family signature 425 448 IPR018082 -
Pte15g02078 454 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Pte15g02078 454 PRINTS Pollen allergen Amb family signature 396 420 IPR018082 -
Pte15g02078 454 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Pte15g02078 454 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Pte15g02078 454 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Pte15g02078 454 PANTHER PECTATE LYASE 18-RELATED 78 452 IPR045032 GO:0030570
Pte15g02078 454 Pfam Pectate lyase 200 368 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02078 Pte-Chr15 29506389 29509976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02078 41 455 Polysaccharide Lyase AT4G13710 76.303 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02078 K01728 - csin:114307229 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g02078 15 29506389 29509976 Pte15g02078 15 29506389 29509976 RCT