Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02052 ATGGAAGGTCGCCGGGGAATCACGTTACTCGAGCACTTGTCAGTCGTTGATGGCGGGCGGAAAACATTAGAAGGCTTACTGACACTTGATGGCGTCACAGGGACAAAGACAGCTGAACGACCACCCGAAGATCCACAGCAACAACAAGCCACTGCACCACCAGCTCACCCGGCGACCCATTTGATCTGTAACCGAACTCTGCTAGAAATAATCAAAGCTGACGATTTTAACAAGAAAGGAAGAAACCCTTGGAAAGCTTTGAAGGATCGGCTTGGACTCATTCGGGTTTTGAGTAACAACTCGTCACATCGTTCGAGTAACTCAGTTAGCGAGTTGACACACATCATGACTCAGGATGATCCACCCTCCGCAGGTGACAACACAGAGGAGAACTCAGCCTCCTATATGCCCAACGCTATAAGGGCTGGTTCAAGCCGGTTTGCGGCAACTCGATCCGAGTCGACCCGATATGGTGACTCATTCGACCGCGACGCTTCCGCCGTTTGGGATCGCCGTCCAGTGTCCCGCCACAATTCTAGTCGGCAGTTACCAACTTCGGAGCCCCAGAATCAGAAACGCGAAAGACGCATTACATTTAGAGGGGTAGACGCAGAAGGCGAGGAGGAAAACGACGATCAACCCGATTCGGCGCGCGTAAGCAGGAGCTCGACAGCAGAAGAGCGGACTATGTCAGCTCGAGAAGCAGTGGCAGCCCAGGAAGCGGCAGAAGCTGCAGCAGCGGCCGCGGCAGAATCAGAGCAATCGAAAGACACAGGAGGTGGGGGGATGAAAATGTCGCTGATGGATTTGTTGGAAGAAGAAGGGTCAAGTTATATGATGGGAGATGATGACGAAGACTGTGAAGATGAAGAGGAAGAAGAAGCTGAGAACAAAGAACATGAAGTTGGAAGCGTAGAGTACAATTGCTGCATCTGCATGGTCAGGCATAAAGGTGCAGCCTTCATTCCATGTGGTCATGCATTCTGCAGGTTGTGCTCGAGGGAGCTGTACGTGAGTAGGGGAAATTGCCCCATCTGCAACAATTTCATTGCAGAGATTCTTGACATTTTCTGA 1074 0.513 MEGRRGITLLEHLSVVDGGRKTLEGLLTLDGVTGTKTAERPPEDPQQQQATAPPAHPATHLICNRTLLEIIKADDFNKKGRNPWKALKDRLGLIRVLSNNSSHRSSNSVSELTHIMTQDDPPSAGDNTEENSASYMPNAIRAGSSRFAATRSESTRYGDSFDRDASAVWDRRPVSRHNSSRQLPTSEPQNQKRERRITFRGVDAEGEEENDDQPDSARVSRSSTAEERTMSAREAVAAQEAAEAAAAAAAESEQSKDTGGGGMKMSLMDLLEEEGSSYMMGDDDEDCEDEEEEEAENKEHEVGSVEYNCCICMVRHKGAAFIPCGHAFCRLCSRELYVSRGNCPICNNFIAEILDIF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02052 357 MobiDBLite consensus disorder prediction 33 56 - -
Pte15g02052 357 SUPERFAMILY RING/U-box 308 353 - -
Pte15g02052 357 MobiDBLite consensus disorder prediction 116 139 - -
Pte15g02052 357 ProSiteProfiles Zinc finger RING-type profile. 309 347 IPR001841 -
Pte15g02052 357 Pfam Zinc finger, C3HC4 type (RING finger) 307 351 - -
Pte15g02052 357 MobiDBLite consensus disorder prediction 170 264 - -
Pte15g02052 357 MobiDBLite consensus disorder prediction 188 204 - -
Pte15g02052 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 357 IPR013083 -
Pte15g02052 357 PANTHER OS01G0917900 PROTEIN 29 357 - -
Pte15g02052 357 MobiDBLite consensus disorder prediction 280 299 - -
Pte15g02052 357 MobiDBLite consensus disorder prediction 280 297 - -
Pte15g02052 357 MobiDBLite consensus disorder prediction 40 54 - -
Pte15g02052 357 SMART ring_2 309 346 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02052 Pte-Chr15 28800274 28801768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02052 242 358 C3H Transcription Factor Family AT3G25030 51.695 1.54e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02052 - - twl:120006986 196.823