Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02006 ATGCAACTAGTGCCAAATGATGGTCACAAGGAAGTATATTCAGAAAGCGAACCCATCTTGAATCAGTCCCAGGATTCACAAGGATCAGGTGAGTCTTCTTTTACTTGTGAGATCACTACAGATGGTGGAGACTTGGCTGTTGGTGAAGATGATTTCCATAGTCTTCACGTTGACGAAACCAGTCTTTTGATGAACTCAGACCAACCCCAATGCCGGATATGCCTTGATACAGGAGGAGAAGACCTAATTGCTCCATGTTATTGCAAAGGTACTCAGAAGTATGTGCACCGATCATGTCTTGACAATTGGAGATCAACTAAGGAGGGTTTTGCTTTTTCGCATTGTACAGAATGCAGAGCTGTCTTCGTTTTACGTGCCAATGTTCCACCTGATCGCTGGTGGCTAAGATTCAAATTTCAATTCCTTGTTGCCAGGGACCATGCTTTCATATTTATCATTGTTCAGCTGATCGTTGCTTTCTTGGGAATACTTGTGTACAAATTTTATGGTGAAGAATTAAGAGAAATGTTTGGTTACGAAGAACATCCATATGGATTTTACACGATGGCAGTTCTAGCAATTGTTTTAGTGGGTTTGCTCTATGGATTTTTCATAGCCATAATATGTGGACAAAGGATCAATGAACGCCATTTCCATGTCCTTGCCAAACAAGAACTGACAAAAGAATATGTGGTTGAAGACAGAGAACATGTGAAGAATGTCCCCGAACTTCATCCAAGCCATATCACTGAATTAAGGATGCTGGGACTCTATTGA 777 0.4106 MQLVPNDGHKEVYSESEPILNQSQDSQGSGESSFTCEITTDGGDLAVGEDDFHSLHVDETSLLMNSDQPQCRICLDTGGEDLIAPCYCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFVLRANVPPDRWWLRFKFQFLVARDHAFIFIIVQLIVAFLGILVYKFYGEELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHFHVLAKQELTKEYVVEDREHVKNVPELHPSHITELRMLGLY* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02006 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 130 IPR013083 -
Pte15g02006 258 MobiDBLite consensus disorder prediction 16 34 - -
Pte15g02006 258 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 191 258 - -
Pte15g02006 258 MobiDBLite consensus disorder prediction 1 34 - -
Pte15g02006 258 CDD RING_CH-C4HC3_MARCH 71 119 - -
Pte15g02006 258 ProSiteProfiles Zinc finger RING-CH-type profile. 63 125 IPR011016 GO:0008270
Pte15g02006 258 SMART ringv_2 70 119 IPR011016 GO:0008270
Pte15g02006 258 Pfam RING-variant domain 71 118 IPR011016 GO:0008270
Pte15g02006 258 SUPERFAMILY RING/U-box 65 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02006 Pte-Chr15 27033980 27041450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02006 1 218 C3H Transcription Factor Family AT1G50440 61.009 1.38e-90 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02006 - - qsa:O6P43_017866 459.914