Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g02003 ATGGAGAAAGGGGGAGGGGGAAGAGAAGTCAAGAGGCGCAGCGTGAAAGAGAAAGACAGGACAAACTGGAATGTTACCGGCTGTAATTTTTGTGTTAATACTGTGTCCACGGCATGTGTTGTTGACCTATTGAAATTACCAAAAAGCTTGTTTTCCTTTGGCGGCAAGGAACCTCACAAACAAAAAGGAACCCGCTGTAATCTTGCGAGAAAACAAGGGAGCATGGTAACAACTGTGCATCGAGAGTCCGAGAATCAAGGTTATTCATCAATGGCTGTTGAAGGACTAGACTTTTTGAAGAGGCGGAAGAGGAAAAGAGAACAACGTGTAGAAAAGAAACTCGTTGTCAATGAAAGAGTAGAGCTAAAGAGTATGGAAGAGGGATTTTTGGGCTCATGGCATCCTGGTATTGTCACTGCTTCTGGACCCCGGACGCGTCACGTTAGATATGACAATATCTTAGATGATAAGACCTTGGATAATCTTATTGAAAAGGTGAGCGTTTCAGCTATTCTGGATGGAAGTACTTGGCTGGAAGAGCGATGGCCCAAGAAATGTGGGAGTATAAGGCCAGTCCCTCCATTATTGACTTTTTTAAAAACAGACCTTCCTTATGGTCTCTGCGTTGATGTGTACTACGAGGAGGCTTGGTGGGAAGGTGTAATTTTTGATCATCAAAATGGTGAGGATCAGAGAATCATATTTTTTCCTGAATTGGGTGATGAGGTAAAAGCAGATATTAGCCAATTACGTATTACTCGAGACTGGAATGAGGCCACAGATACTTGGCAGCAACGTGGAAAGTGGATATTTCTTGAATTGATTAGGGAGTTTGAGCAAGAGTCTTTTATTGCTGTTTCAGTGAAGCAAATATGGTATGATCTACGGGCTAGAGGTGCTTTTATTAAGGTTGGCGACTGGACTCGTAATAGTAAAGAACTGTGGGAGCCTTTGGTGTTAGATGTTATTCATGAGTACAAGGAGCTCACTTTAAATGAAGTATTTTCAATTCTAGAATTTTCAAATGACTTCTTCAAAGATACGCCTGAGTTGAGAGAAAATGAAACAAATGATTTTGACCTGCTTTCCAAAGTGACTCGGTCTACCGTTGAGGTTGGCATTGCCCTAGAAACCTGCCCTAGGAATAGCGAATCCGAATTTCATCCTGAGGTTGGAGTTGCTGAAAATTTGCTTGAGAAGGTGGACAAAGCAATTGTGCGAGTGAACAATGATCGAAATGCTGGTGAGATTCCTCCGGTTGAAGAGAACTGTAGAGATCAACTACAGAATGGAATATCAAGCACATATAAGGATACTGACTCAGTTGCATTCGTCCCAGAGTGTGCAATGTTAGCACAAAAGGAATCTGGGGAACCAACTCAAGATGTACCTTTCTTTACAGAAGGAGAAATCCCATGCATTACATCTGTTGTCACTGAAGGAGAACTTGATAGAAATCGAAACAATGGACCATCTGACAGTATCAATTGGAAACCTAAATCTCTTCCTGATGGAGTATCCTGTATCCGAGCTGTTCAAATTTATGAGAGAACATCTTCCAGAAGTGTTAGGAATAATTATAAGCCTGAAGTCCTTAAACATCTCTCATACCATGGCTGGAAAAGGGAATCGTACCAAGATAATCGGTATCATAGAGTTCGATATCTATCTCCTGATGGGAAGCGCTACGGCTCACTGCTAACGGCATGCTCAGCAATAATAAAGCATGAGACAAGAATGGATTCTGAACCATCCCTGGACGACCGGGGAAGTCTGAGCTCTGCAACTGATGATACATTTTCAGACATAATAACTTTGAAACCAGAAAACAATCAGGAATCTGAGTGTTGCCCCAAAATTGTCCAACCTTGTTCTCCAGGTTCAGTGCTTGATCCTGAACTTTGTCCTGAGGCAATTGTGGAGTACATTTTGCATGCAAGAGATAAAGCCTCGAAGAATACCAAAAATATGAGATTGAAAGCTCAGAAGCACCTCTTAGCTGTAGGCTGGGAATTTTGTTTCTACACATCTAGAAGAACTAGGCAAATTCGATACATCTCACCTCGGGGACATACATATCCTTCTCTTCTAAAAGCTTGTGAGACTGTAATGAGCACTTCTGAACACTCGTGTACCAGCAAGGAGAATGACAATCTAATGAAAATTGACAAGTTATCATCTGGAAGAAGTGACAATTCTTCTGGAATGTGTTTTAGCTTCTCCCAATCAATAACACTTTCAGATCCAAATGAAAGGAGTACCATAGAGAAGAATTTATCGCATCCTTCTACACACCAATTGAAGAAAACTAATGCCAGAAATGTAAATCGAATGGAAAGCAGATTGTCTCAAAAATGGTATAAAGAGAGAGAATGCAAAGAAGGTCGACGTGGGAAGCGCATATTGCGATCAAGAAAGACTGTACAGCAAGTATTTGTGCCATGTTCTTCACACATAAAACCTCAAAATATGATTTCTTGGCTTGTAGACAATAATGTACTGGTTCGAAGGGACAAGGTATCTTATCGTGTTAATAAAACCAGTCGTTCAAAGCTTGCTGAGGGGATTATAATGTATGAGGGAATCAAGTGCAACTGTTGTCAGTTGATATTTAGTCTAACTGGCTTTGCAAACCATGCTACTGTAAGCAGTCACAGCAGACCAGCTGCTCATATATTTCTGGAAGATGGTAGGTCTTTATTAGAATGTCTGATGCAAATGAGAAATGATTCTAGTTTGATAACTTCTATCAGAGAGTCTCATGATGAGCTGAAAGATGATCAGCAAGTGAGTGAGAATGATCATATCTGTTCAGTTTGTCATTATGGCGGTGAAATAATTCTATGTGATCATTGCCCATCCTCATTCCACCCAAGCTGTGTCTATTTGAAGGACATTCCTGATGGTGACTGGTTTTGCCCGTCATGTTGCTGCAAGATTTGTGGGAAGAACAATTTCAAAGATGACAAAAATAACCATTTTCTTAGCTGCAGTCAATGTGAACGGAAGTATCATGTTCGTTGCCTGAAGAATATTGGTGTGAATAAGATAAGAGAACAGACTTGGTTTTGCTGCAATAATTGTGAGAAGATATATTTAGGCCTCCATAGAATTTTGGGAAAACCAATTCCAGTGGGTGTGAATGATCTAACTTGGACTTTAGTGAAGCATTTGAACTCAGACACTTGTGGTCTTCATTCCCATGGAACTGATTATCTGGCTGAGAGTTATTGCAAGCTCAATGTTGCTCTTGCTGTGATGCATGAATGTTTTGAGCCTGTAAATGACTCTTATACTAGAAGAGATCTCGTGAAAGACGTCATTTTCAGTAGATGGTCAGGGCTTCAACGTTTGAATTTTGAAGGCTTCTATACTATTCTTCTGGAAAGAGATGAGGAATTGGTGTCTGTGGCTACAGTAAGGGTCTATGGAGAGAAGGTTGCGGAAGTACCTCTAGTTGGGACTAGAGTTCAATATCGTCGGCTAGGAATGTGTAGAATGTTAATGAATCAGCTTGAAAAAAAGCTGATGGAACTTGGAGTGGAAAGGCTGGTTTTACCTGCTGTTCCTTGTGTGTTGAACACATGGACTTCTTCCTTTGGTTTCTCAAGCATTGCAAATTCTGAGAGATTGCAGTTTCTAGATTATACGTTCCTTGATTTTCAGGACACTATCATGTGCCAGAAGCTATTGAAGGATCCACCGGTGAAATCAATTATATTTGAAGAATCTCTTCCAAAATCTCATGATGCCTGTGGAAGTGATAGTGTTGAACATGAAGGATCAAGTCCCTCACCTGAAGCTGAAGATATTGAGAAGAGTGGAACAGAAAGATCTCATGAGACTTAA 3849 0.4066 MEKGGGGREVKRRSVKEKDRTNWNVTGCNFCVNTVSTACVVDLLKLPKSLFSFGGKEPHKQKGTRCNLARKQGSMVTTVHRESENQGYSSMAVEGLDFLKRRKRKREQRVEKKLVVNERVELKSMEEGFLGSWHPGIVTASGPRTRHVRYDNILDDKTLDNLIEKVSVSAILDGSTWLEERWPKKCGSIRPVPPLLTFLKTDLPYGLCVDVYYEEAWWEGVIFDHQNGEDQRIIFFPELGDEVKADISQLRITRDWNEATDTWQQRGKWIFLELIREFEQESFIAVSVKQIWYDLRARGAFIKVGDWTRNSKELWEPLVLDVIHEYKELTLNEVFSILEFSNDFFKDTPELRENETNDFDLLSKVTRSTVEVGIALETCPRNSESEFHPEVGVAENLLEKVDKAIVRVNNDRNAGEIPPVEENCRDQLQNGISSTYKDTDSVAFVPECAMLAQKESGEPTQDVPFFTEGEIPCITSVVTEGELDRNRNNGPSDSINWKPKSLPDGVSCIRAVQIYERTSSRSVRNNYKPEVLKHLSYHGWKRESYQDNRYHRVRYLSPDGKRYGSLLTACSAIIKHETRMDSEPSLDDRGSLSSATDDTFSDIITLKPENNQESECCPKIVQPCSPGSVLDPELCPEAIVEYILHARDKASKNTKNMRLKAQKHLLAVGWEFCFYTSRRTRQIRYISPRGHTYPSLLKACETVMSTSEHSCTSKENDNLMKIDKLSSGRSDNSSGMCFSFSQSITLSDPNERSTIEKNLSHPSTHQLKKTNARNVNRMESRLSQKWYKERECKEGRRGKRILRSRKTVQQVFVPCSSHIKPQNMISWLVDNNVLVRRDKVSYRVNKTSRSKLAEGIIMYEGIKCNCCQLIFSLTGFANHATVSSHSRPAAHIFLEDGRSLLECLMQMRNDSSLITSIRESHDELKDDQQVSENDHICSVCHYGGEIILCDHCPSSFHPSCVYLKDIPDGDWFCPSCCCKICGKNNFKDDKNNHFLSCSQCERKYHVRCLKNIGVNKIREQTWFCCNNCEKIYLGLHRILGKPIPVGVNDLTWTLVKHLNSDTCGLHSHGTDYLAESYCKLNVALAVMHECFEPVNDSYTRRDLVKDVIFSRWSGLQRLNFEGFYTILLERDEELVSVATVRVYGEKVAEVPLVGTRVQYRRLGMCRMLMNQLEKKLMELGVERLVLPAVPCVLNTWTSSFGFSSIANSERLQFLDYTFLDFQDTIMCQKLLKDPPVKSIIFEESLPKSHDACGSDSVEHEGSSPSPEAEDIEKSGTERSHET* 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g02003 1282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 979 1031 IPR013083 -
Pte15g02003 1282 SMART PHD_3 978 1029 IPR001965 -
Pte15g02003 1282 SMART PHD_3 936 977 IPR001965 -
Pte15g02003 1282 SMART agenet_At_2 112 197 IPR014002 -
Pte15g02003 1282 SMART agenet_At_2 201 258 IPR014002 -
Pte15g02003 1282 CDD Tudor_Agenet_AtDUF_rpt1_3 114 194 - -
Pte15g02003 1282 MobiDBLite consensus disorder prediction 1248 1282 - -
Pte15g02003 1282 PANTHER PHD FINGER PROTEIN 12 636 1251 IPR042163 GO:0003714|GO:0045892
Pte15g02003 1282 Pfam Tify domain binding domain 856 907 IPR032308 -
Pte15g02003 1282 SUPERFAMILY FYVE/PHD zinc finger 923 982 IPR011011 -
Pte15g02003 1282 Pfam Agenet domain 118 194 IPR008395 -
Pte15g02003 1282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 914 978 IPR013083 -
Pte15g02003 1282 Gene3D - 1083 1222 - -
Pte15g02003 1282 CDD NAT_SF 1126 1186 - -
Pte15g02003 1282 ProSiteProfiles Zinc finger PHD-type profile. 934 979 IPR019787 -
Pte15g02003 1282 MobiDBLite consensus disorder prediction 1247 1282 - -
Pte15g02003 1282 ProSiteProfiles Zinc finger PHD-type profile. 975 1031 IPR019787 -
Pte15g02003 1282 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1070 1231 IPR000182 GO:0016747
Pte15g02003 1282 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1085 1206 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g02003 Pte-Chr15 26982896 26997365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g02003 123 344 PHD Transcription Factor Family AT5G58610 48.430 1.17e-63 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g02003 - - pcin:129318355 909.442