Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01989 ATGGCTACTTACGCTGCTATGAAGCCTACCAAACCCGGTCTTGAAGATCACCAAGAGCAAATTCACAAGATCAGGATCACTCTTTCTTCAAAGAATGTCAAAAACCTTGAGAAAGTTTGTGCGGATTTGGTTCGTGGTGCTAAGGATAAGAAGCTGAGAGTCAAGGGACCAGTTAGGATGCCCACTAAAGTGCTTCTCATCACTACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACTTGGGATAGGTTTGAGCTCCGCGTGCACAAGAGAGTTATTGACCTCTTCAGTTCTCCCGATGTTGTGAAGCAGATCACTTCTATCACCATTGAGCCTGGTGTGGAGGTTGAGGTTACAATTGCTGAATGA 369 0.4607 MATYAAMKPTKPGLEDHQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKKLRVKGPVRMPTKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAE* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01989 122 PRINTS Ribosomal protein S10 family signature 58 73 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte15g01989 122 PRINTS Ribosomal protein S10 family signature 80 94 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte15g01989 122 PRINTS Ribosomal protein S10 family signature 23 36 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte15g01989 122 Pfam Ribosomal protein S10p/S20e 25 119 IPR027486 -
Pte15g01989 122 SMART Ribosomal_S10_2 25 119 IPR027486 -
Pte15g01989 122 NCBIfam 30S ribosomal protein S10 22 120 IPR005729 GO:0003735|GO:0006412|GO:0015935
Pte15g01989 122 FunFam 40S ribosomal protein S20 8 122 - -
Pte15g01989 122 SUPERFAMILY Ribosomal protein S10 23 120 IPR036838 -
Pte15g01989 122 Hamap 30S ribosomal protein S10 [rpsJ]. 21 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte15g01989 122 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 16 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte15g01989 122 Gene3D Ribosomal protein S10 domain 8 122 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01989 Pte-Chr15 26741654 26743109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01989 1 122 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 89.431 1.13e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01989 K02969 - gmx:100499912 233.802