Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01970 ATGGTGCCAGTGGTGGGCAACGTCAGTGGACGGACTGCAGCCGCAGGTAGCGGCGAGACTGACGACGACAAGGTTGATCAGCAACAAGGCAGTCCCTCCGATCCCTCGGGAAATGTAGTCGTCGTCGAAAGGAAACTTAACCACAATGCTAACGAGCGTCACCGCCGCCGGAAGATCAGCACCTTGTATACCTCTCTACGGTCACTGCTTCCTAACGTAGATCACAAGAGAAAATTAAGCATGCCAGCTACAATTTCTCACGTTCTAGAGTACATACCAAAGCTACGACAAGAAATAGACGAGCTGAGTGAGAAGAAGGAAGATCTCTTACGAAGAGTTTCTAGGTCACGAGAAAAACAAAAGAAGCCACAGAAGTCTTACAAATGCGTACGCAGGAGCACCCCATTCAAGATTTCATTTAGTCCGCTGAATGAGCAAGAACTTGTGATTCAAATACCCACAGATAAACTGCATGTGAATCTTTTGTCAGAGATCTTACTCATGTTAGAAACAGAAGCTGATGGAATTCTACTGCAGAATGCAGCCACCTTTGAGTACTTGGGAGAGACGAAAATCTTACACACCCTCCATTTTCAGGTGGGAAGAAGTTTCAACGAGCAGCAACTGGAAGCTCTGAAGGAGAAGCTTCAATCATATATGGGTTAG 666 0.464 MVPVVGNVSGRTAAAGSGETDDDKVDQQQGSPSDPSGNVVVVERKLNHNANERHRRRKISTLYTSLRSLLPNVDHKRKLSMPATISHVLEYIPKLRQEIDELSEKKEDLLRRVSRSREKQKKPQKSYKCVRRSTPFKISFSPLNEQELVIQIPTDKLHVNLLSEILLMLETEADGILLQNAATFEYLGETKILHTLHFQVGRSFNEQQLEALKEKLQSYMG* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01970 221 SMART finulus 49 101 IPR011598 GO:0046983
Pte15g01970 221 FunFam Transcription factor ORG2 39 124 - -
Pte15g01970 221 Pfam Helix-loop-helix DNA-binding domain 44 95 IPR011598 GO:0046983
Pte15g01970 221 Gene3D - 41 127 IPR036638 GO:0046983
Pte15g01970 221 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 41 218 - -
Pte15g01970 221 Coils Coil 92 119 - -
Pte15g01970 221 MobiDBLite consensus disorder prediction 1 38 - -
Pte15g01970 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 95 IPR011598 GO:0046983
Pte15g01970 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 109 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01970 Pte-Chr15 26014756 26021629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01970 41 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.250 2.67e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte15g01970 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01970 - - aew:130759639 150.599