Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01966 ATGGTGGAGCCTATGGAGCTACTCCGATCGAATCTCTCTCGGGTCCGGATTCCGGAGCCTACCAATCGTATTTACAAGCAAGAATGTTGCTTAACCTTTGATACTCCTAGATCAGAAGGGGGATTGTTCGTCGACATGTACACTTTTGTTGCTTTTGCAAAGGAGTGTGCGCTTTGGAATTTTCAGAAGACTGGAGATTCTGTTTATATGCATATAAAGCAGACAAAGAAGCTAGTTGCTGAAGACAGACCTTCAAAGAAACCCACCTTGTTGGCAATAGGTGTTGATGATGGATTTAATAACAACGAGGCAGAATATGAAGAAACTCATAGTATTGTCATATTACCTGATTTTGTATCTCTTCCATTTCCCTCTGTGGAATTACCAGAAAAGGTAAGATTGGCGGCCAATGCTATCCTTTTGGCTGAAGGTGCAGAGCGAAAAGAGCAGGTTGCATCTTGGGTTGCTGACACAAAACAGACCAGTAGTTATGCATTGAATTTAAAGCAAATTGACAATGGTGTTGTTATTCCTCCATCTCGTTGGAAATGTGCTAAATGTGAGAAAACAGAGAATCTTTGGCTTAATCTGACGGATGGAATGATCCTTTGTGGGAGGAAAAATTGGGATGGAAGTGGTGGTAACAACCATGCTATTGAACACTACAAAGAGACTGGCTATCCTCTTGCTGTGAAGCTTGGGACAATTACAGCTGATCTTGAATCTGCAGATGTTTTTTCTTATCCTGAGGATGATAGTGTACTGGATCCTCATTTGGCACAGCATTTGGCTTTTTTTGGCATTGATTTCTCATCACTACAGAAGACTGAAATGACAACTGCTGAAAGAGAACTTGATCAAAATACCAATTTTGACTGGAACCGGCTCCAAGAAAGTGGCCAGGAAGTTGAACCAATTTTTGGGCCAGGTTATACTGGTCTTGTCAATCTTGGAAATAGTTGTTACATGGCGGCTACCATCCAAGTTGTATTTTCAACAAAATCCTTCTGTTCAAGGTATTACTTGAATCAAAGTTTGAAGGCGGCTTTTGAAATTGCTCCTACTGATCCTACTGTAGACTTGAACATGCAATTGACAAAACTTGCCCATGGTTTGCTATCTGGAAAATATTCTGTTCCTGCACTTGACGACAAAGATAATGCGAATGGTACTGTCTCAACTATGACATCGAGACAGGAAGGGATACCCCCAAGGATGTTCAAAGCGGTTATTGCTGCAAGCCATCCTGAGTTCTCATCAATGAGACAACAGGATGCATTGGAATTTTTCCTACATTTTCTCGACCACATTGAAAGAGCTAATGCTGGGAAACCTGAATTGGATCCTGCAAAGAGTTTCAAGTTTGGTATTGAAGAACGAATCCAATGTTCATCAGGAAAAGTTAAATACAATGGAAGGCATGATTATATTCTGTCTCTTAATATCCCACTGCAGGAAGCTACAAATAAAGAAGAACTGGAAGCTTTTCAAAAACTGAAAGCAGAAAAGCTTGCTGATGGGAAGGAAGTGACCAGTGATGAAGTCGTACGTCCTAGGGTTCCTCTTGAAGCTTGCCTTGCAAACTTTTCTTCTCCTGAAGAGATTCATGATTTTTACAGCACTGCCTTGAACGCTAAGACAACGGCACTCAAATCAGCAGGTTTAACTTCGTTCCCTGATTATCTTGTGCTACACATGCGGAAATTTGTAATGGAAGTGGGTTGGGTACCAAAAAAGCTAGATGTTTATATTGACGTTCCCGATATAATAGATATCAGTCACTTGCGGAGTAAAGGTCTCCAACCTGGAGAAGAGCTATTAGTTGATGGTGCCCCAGATGGTGAGACAGGATCCAATACACCATTAGCTGATGAAAGTATTGTTGCGCAGCTAGAATCGATGGGATTTAATCATTTCCGTTGTCAAAAGGCTGCAGTAAAAACCTCTAATGTTGGAGTTGAAGAGGCCATGAACTGGCTTCTTTCTCATATGGACGATCCAGATATTGATGTTCCTATTTCCCAAGAAGCACATAGTGGACAAGAATTCTCAAGCGTTGACCAATCAAAAGTTGATACTCTGATTTCCTTTGGATTTCAAGAAGACGTAGCGAGGACGGCTCTGAAGGCTTCGGGTGGTGACGTTGAGAAAGCAACAGATTTGATATTTAGTGATCCCAGTGCGTTTACTTCATCTGACATGGATGCCACTGCATCAAATAGCACACCTGCTAAAGATGATGCTCAGTTGCCTGATGGAGGAGGGAGGTATAAACTCATGGGAATTGTCAGCCATATGGGAACCTCTACTCAATGTGGTCACTATGTTTCTCACATCTTGAAAGATGGTAGGTGGGTCATTTTCAACGACAACAAGGTTGGGGCATCAGTTAATCCCCCAAAGGACATGGGGTATCTCTACTTCTTCGAGAGGCTGAATAGTTGA 2445 0.418 MVEPMELLRSNLSRVRIPEPTNRIYKQECCLTFDTPRSEGGLFVDMYTFVAFAKECALWNFQKTGDSVYMHIKQTKKLVAEDRPSKKPTLLAIGVDDGFNNNEAEYEETHSIVILPDFVSLPFPSVELPEKVRLAANAILLAEGAERKEQVASWVADTKQTSSYALNLKQIDNGVVIPPSRWKCAKCEKTENLWLNLTDGMILCGRKNWDGSGGNNHAIEHYKETGYPLAVKLGTITADLESADVFSYPEDDSVLDPHLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRLQESGQEVEPIFGPGYTGLVNLGNSCYMAATIQVVFSTKSFCSRYYLNQSLKAAFEIAPTDPTVDLNMQLTKLAHGLLSGKYSVPALDDKDNANGTVSTMTSRQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFLDHIERANAGKPELDPAKSFKFGIEERIQCSSGKVKYNGRHDYILSLNIPLQEATNKEELEAFQKLKAEKLADGKEVTSDEVVRPRVPLEACLANFSSPEEIHDFYSTALNAKTTALKSAGLTSFPDYLVLHMRKFVMEVGWVPKKLDVYIDVPDIIDISHLRSKGLQPGEELLVDGAPDGETGSNTPLADESIVAQLESMGFNHFRCQKAAVKTSNVGVEEAMNWLLSHMDDPDIDVPISQEAHSGQEFSSVDQSKVDTLISFGFQEDVARTALKASGGDVEKATDLIFSDPSAFTSSDMDATASNSTPAKDDAQLPDGGGRYKLMGIVSHMGTSTQCGHYVSHILKDGRWVIFNDNKVGASVNPPKDMGYLYFFERLNS* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01966 814 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 258 IPR001607 GO:0008270
Pte15g01966 814 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 104 811 - -
Pte15g01966 814 SMART uba_6 687 724 IPR015940 -
Pte15g01966 814 SMART uba_6 624 662 IPR015940 -
Pte15g01966 814 MobiDBLite consensus disorder prediction 733 752 - -
Pte15g01966 814 PIRSF UBP 5 813 IPR016652 GO:0004843|GO:0016579
Pte15g01966 814 FunFam Ubiquitin carboxyl-terminal hydrolase 305 633 - -
Pte15g01966 814 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 812 IPR028889 -
Pte15g01966 814 Pfam UBA/TS-N domain 624 660 IPR015940 -
Pte15g01966 814 Pfam UBA/TS-N domain 687 722 IPR015940 -
Pte15g01966 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Pte15g01966 814 FunFam Ubiquitin carboxyl-terminal hydrolase 621 663 - -
Pte15g01966 814 FunFam Ubiquitin carboxyl-terminal hydrolase 148 257 - -
Pte15g01966 814 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 757 775 IPR018200 GO:0004843|GO:0006511
Pte15g01966 814 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 685 725 IPR015940 -
Pte15g01966 814 CDD Peptidase_C19B 313 810 - -
Pte15g01966 814 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Pte15g01966 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 113 IPR013083 -
Pte15g01966 814 FunFam Ubiquitin carboxyl-terminal hydrolase 664 729 - -
Pte15g01966 814 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Pte15g01966 814 FunFam Ubiquitin carboxyl-terminal hydrolase 5 102 - -
Pte15g01966 814 SUPERFAMILY UBA-like 680 728 IPR009060 GO:0005515
Pte15g01966 814 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Pte15g01966 814 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Pte15g01966 814 Gene3D Cysteine proteinases 305 813 - -
Pte15g01966 814 SUPERFAMILY Cysteine proteinases 308 812 IPR038765 -
Pte15g01966 814 SUPERFAMILY RING/U-box 162 270 - -
Pte15g01966 814 Pfam Ubiquitin carboxyl-terminal hydrolase 312 809 IPR001394 GO:0004843|GO:0016579
Pte15g01966 814 Gene3D - 681 744 - -
Pte15g01966 814 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Pte15g01966 814 Gene3D - 601 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01966 Pte-Chr15 25986471 25994809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01966 620 670 C2H2 Transcription Factor Family AT1G04850 39.216 1.80e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01966 K11836 - cave:132174742 1354.73