Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01954 ATGGCAGATGATCAATTTTCAGCAAGTGGAAACTGGTGGGATACGGAGCGGAACAGATATGATAGTGGGGCTTCACAGTCTTCCTCCTCAGGACTTACTACTATAGCAAACTTTGGTTGCCAATCGGATATGGTGGACATGAAGCCAAGGTCGTCCATGGATTCCATGGCTCTGTCTATGTCCTCTTCTATGATTTTTCATGGTAACCATAAGCTACAAACAGTTGACTCTGCCGGCACCACCGACCCCAACTTGCACATGATGGCTTTAGGTCTTTCTAATGAACCCATGGATTGGAATCAACCATCATTACTTCGAGTTGAGAAGCCACCGGAGAATAGTTTCAGGTCGATGCTGCAAGCAAACGTGAACTCACCAACCACAAATCTCCCACATGAAACTGGAATGGGGTTATCTCAAGTCCAGTGGAGAGAAAAATTATTTTTTGGTGGATGTACTCCTGATGAAACCTCCACCAATGAATTCAAGCAAGTCAATAGGGGTTTCTCTTTGGATCAATCCCATCATCAGTTTAGTCCTCAGTACAGCTCCGGCGACAGTACAATTACATGTCAAGGCTTGCCATCAAGTTTTCAGGTGGAGTCATCAACTATATACGGAAATCCGTCGGTACTACAAGGAGTCATGAGACCTGAGCATAGTAATCAACCCCAACAGCCTCTAATCAATCTGAAATATCCAGCAAGTTATGGATTCAAGCATAATTCTAGTACTGAACCAGTGCCATCTTGGTCCAAAGTTCCTCAGTTTCTAAGGTCTTCTCCACCTAAACAAGCACCCGATATACACTTTAATGACAACGCTCCTTTCTGGAATGCAACTGATCCAGTCATTAAGGATGGTCGACCAAGCTTTTTTCCTTCATTGCAATCTCCATTTTCTACTCCTCAGACTCAGTCTAAGAATATATCATCTCAAGTGCGAGACTCAAGTGTTGTTGCAAAAAAAAGTGGAAGTACAGAAACAGCATCTAAGAGGCCTCGAAATGAAACCTCATCTCCGATGGCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGAGACAGAATCACTGCGCTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTCTCTGAAGCCACTGAATACATCAAATTTCTCCATGAACAAGTGACTGCATTGAGCTCACCATATATGAAAAGTGGAGGTTCCATGCAAAATCAGCAACAGATCAATTCTGGCAAATCTAAGGAATCTGAGGGTCCAAAACAAGACCTAAGGAGCAGAGGGCTATGTTTGGTACCAGTTTCGAGCACATTTCCCGTCACTCATGAAAACCCAGCTGATCTTTGGATACCAACATTTGGAGGGACATTCAGATAG 1377 0.4365 MADDQFSASGNWWDTERNRYDSGASQSSSSGLTTIANFGCQSDMVDMKPRSSMDSMALSMSSSMIFHGNHKLQTVDSAGTTDPNLHMMALGLSNEPMDWNQPSLLRVEKPPENSFRSMLQANVNSPTTNLPHETGMGLSQVQWREKLFFGGCTPDETSTNEFKQVNRGFSLDQSHHQFSPQYSSGDSTITCQGLPSSFQVESSTIYGNPSVLQGVMRPEHSNQPQQPLINLKYPASYGFKHNSSTEPVPSWSKVPQFLRSSPPKQAPDIHFNDNAPFWNATDPVIKDGRPSFFPSLQSPFSTPQTQSKNISSQVRDSSVVAKKSGSTETASKRPRNETSSPMAAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEATEYIKFLHEQVTALSSPYMKSGGSMQNQQQINSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHENPADLWIPTFGGTFR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01954 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 398 IPR036638 GO:0046983
Pte15g01954 458 CDD bHLH_AtbHLH_like 342 393 IPR045239 -
Pte15g01954 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Pte15g01954 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 172 439 - -
Pte15g01954 458 MobiDBLite consensus disorder prediction 289 343 - -
Pte15g01954 458 MobiDBLite consensus disorder prediction 396 424 - -
Pte15g01954 458 Gene3D - 341 411 IPR036638 GO:0046983
Pte15g01954 458 MobiDBLite consensus disorder prediction 294 338 - -
Pte15g01954 458 MobiDBLite consensus disorder prediction 396 415 - -
Pte15g01954 458 SMART finulus 342 391 IPR011598 GO:0046983
Pte15g01954 458 FunFam Transcription factor bHLH123 family 346 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01954 Pte-Chr15 25811323 25813484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01954 106 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.340 1.35e-66 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01954 - - gmx:100778697 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01954 15 25811323 25813484 Pte15g01954 15 25811323 25813484 RCT