Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01933 ATGGTTTCCCCTGAAAATACCAATTGGTATTTTGACTATGGTTTCGTAGATGACCTACCCGTCACGGATGGGATCCCCACTTGCGGTTTTAACTGGTCGGTTCAGCCCTTAGCTGGTTCTTCTGCTATCAGTCTTGAAAAGGATGGGTCTGTGGGAGATTCTGATGCCCAAAAAGAGTCTGGATCAAAGAAGAGGGGTAGATCTGATTCATCTTCTGCATCCAGCTCCAAGGCATGTCGCGAGAAATTGCGTAGGGATAGACTGAATGACAAGTTTCTTGAGTTGGGCTCCATATTGGAGCCTGGAAAGCCTCCAAAGACAGATAAATCTGCCATTTTGGTGGAAGCAGTCAGAATGGTGACTCAGTTGCGTGGTGAAGCTCAGAAGTTGAAGGATACAAATATGAATCTCCAAGAGAAGATTAAAGAGTTAAAGGCTGAAAAGAGTGAACTTCGGGATGAGAAGCAGAGGCTTAAGGCTGAGAAAGACAAGTTAGAGCAACAGCTCAACACCATGAACTCACAACCTGGTTTCATGCATGCTCCACCTGCAATCCCAACTGCATTTGCTCCTCAAGTCCAAGCCCCAGGGCACAAGTTGGTGCCTTTCATTGGTTACCCTGGAGTTGCAATGTGGCAATTTATGCCACCAGCTTCAGTCGATACTTCGCAGGATCATGTACTCCGTCCACCTGTTGCTTAA 702 0.4658 MVSPENTNWYFDYGFVDDLPVTDGIPTCGFNWSVQPLAGSSAISLEKDGSVGDSDAQKESGSKKRGRSDSSSASSSKACREKLRRDRLNDKFLELGSILEPGKPPKTDKSAILVEAVRMVTQLRGEAQKLKDTNMNLQEKIKELKAEKSELRDEKQRLKAEKDKLEQQLNTMNSQPGFMHAPPAIPTAFAPQVQAPGHKLVPFIGYPGVAMWQFMPPASVDTSQDHVLRPPVA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01933 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 142 IPR036638 GO:0046983
Pte15g01933 233 MobiDBLite consensus disorder prediction 51 66 - -
Pte15g01933 233 CDD bHLH_AtILR3_like 77 152 - -
Pte15g01933 233 SMART finulus 78 129 IPR011598 GO:0046983
Pte15g01933 233 MobiDBLite consensus disorder prediction 45 82 - -
Pte15g01933 233 Coils Coil 113 175 - -
Pte15g01933 233 FunFam Transcription factor bHLH34 63 121 - -
Pte15g01933 233 CDD bZIP 138 169 - -
Pte15g01933 233 Gene3D - 75 152 IPR036638 GO:0046983
Pte15g01933 233 Pfam Helix-loop-helix DNA-binding domain 76 123 IPR011598 GO:0046983
Pte15g01933 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983
Pte15g01933 233 PANTHER BHLH TRANSCRIPTION FACTOR 4 233 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01933 Pte-Chr15 25460495 25463694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01933 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.574 1.18e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte15g01933 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01933 - - pper:18778871 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01933 15 25460495 25463694 Pte15g01933 15 25460495 25463694 RCT