Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01904 ATGCTCACGGCGGTAGTGTCATTAGCCATTATCATGGGGGTAGTTTTTGTACTTCATAAATATGCAAGGAATGTTGTAAGGAGACATATTCGTGCTGCCATGCGTTCCATTGCTCAGGCACGGTCTACTTCTCCACATGTTATAGGCCTTACCCCAGAAATTATTGCAGCTTTGCCTAGCGTTGTGTTCAAATCGGAACAATTTTGTGATAATGATCACGAAACAGTTGAATGTACGATTTGTTTGAGCACATTGGAAGATGGGGATAATGCAAGATTACTTCCCAATTGTAAGCATATTTTTCATTTAGAGTGCATTGATCATTGGTTGGCTGAAAACCCCACATGTCCCATTTGTCGAGGCAAGGTTGATCCGTCGGTCGAACCCCAGCTTGAACCGGAACCACGTGAGAGTCCGGTAGGTCTTGCTGGCGCCGACAATGGTGGACCAACAAGTCCAAGCTTGGATCGTACGAGTCCTTTTTTTTCCAGGAATGCGGGAAAAGCTTCTTCTCGCCCCAGAGTCCCTAGCAGCCTTAAGAGTCCAATCAGAGGCCTAGACAAGATTGAAGGGAAAGGTGCATTCCCGGATTGTTCCGGAGGAGCACTCTTCCGCATAAACAATCAACTTCAATTAAGTAGGTTAGTGCGCCATGTACAGAGTTGA 666 0.4595 MLTAVVSLAIIMGVVFVLHKYARNVVRRHIRAAMRSIAQARSTSPHVIGLTPEIIAALPSVVFKSEQFCDNDHETVECTICLSTLEDGDNARLLPNCKHIFHLECIDHWLAENPTCPICRGKVDPSVEPQLEPEPRESPVGLAGADNGGPTSPSLDRTSPFFSRNAGKASSRPRVPSSLKSPIRGLDKIEGKGAFPDCSGGALFRINNQLQLSRLVRHVQS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01904 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 129 - -
Pte15g01904 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 126 IPR013083 -
Pte15g01904 221 MobiDBLite consensus disorder prediction 127 187 - -
Pte15g01904 221 SMART ring_2 78 119 IPR001841 -
Pte15g01904 221 Pfam Ring finger domain 77 120 IPR001841 -
Pte15g01904 221 CDD RING-H2_EL5-like 77 120 - -
Pte15g01904 221 SUPERFAMILY RING/U-box 57 126 - -
Pte15g01904 221 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Pte15g01904 221 MobiDBLite consensus disorder prediction 151 177 - -
Pte15g01904 221 FunFam E3 ubiquitin-protein ligase ATL6 38 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01904 Pte-Chr15 24960216 24962338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01904 1 143 C3H Transcription Factor Family AT2G42360 47.260 1.25e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01904 K19038 - qsa:O6P43_000799 151.754