Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01885 ATGGCAACTAACAGATTCTTGTGTGAAATCTGTGGTAAGGGATTCCACAGGGATCAAAATCTTCAGCTCCATCGGCGTGGACACAATCTCCCATGGAAACTCAAGCAAAGGACAAGCGAAGAACCAAAGAAGCGTGTGTACGTTTGCCCTGAGAAGACTTGTGTTCACCACCATCCTTCAAGGGCTCTGGGAGACCTAACTGGTATCAAAAAGCACTTCTGTAGAAAACATGGTGAGAAGAAATGGAAGTGTGAGAAGTGCTCAAAGCGTTACGCTGTGCGATCGGATTGGAAAGCACACTCAAAAACCTGCGGTACCAGGGAATATAAATGCGATTGTGGGACAATATTTTCAAGGAGAGATAGCTTTATTACTCATAGGGCCTTCTGTGACGCCTTAGCGGAAGAAACAGCCAGATTAAATGCAGCTTACAACATGAACAACCTTTTATTAGGCAATATGAGCTTTAGCACCATGGCAACATCCCTAGGGCCTGACATGGGAGCAAATTCTTCATCGATCTTCAAGTCGGTTTCGATCGATAACGGAACAAATAATACAACAACCAGCGGGCTTTCTTTGTCTATGAGTGAAGGATGTCAACCACGTGATGTACAGGATATTCATCACATTGGACCAGCAGTAACCACTGCGGCAATGTTTGGCAATCCACTTGCTTCGTGCTCCAATCCTCCACCATCTGATTACCAGCTCAGTTGGGTCTTCGGAAATAAACTTCTATCTAGTGATAGTGAAGAGCTATGTGCTTCTTCACTTGCTGTCAAACATGTAGCTGGAAGTGGAGATCAACTGATCAGTATTCCCTCCTTGTATAGATCGCGGCACCAATCTTATCAAACAACTTCAGCAAATATGCCAGCGACTTCTTTGTTGCAGAAGGCTGCTCAAATTGGTGCAACTTCAACTGATCATCACCCATCGTTCTCGCGAAGCTTTAATATGAAATGCGGTAACAGCCAAATTCAAGATAGGAACGAGTTTTGTGGAACGTACGGCTCAATTTCAGTATTTGCTAGCCTGGGAAATAACCTAGAAAACTCAGCTTGTGATTTGTCACAAATGCATTCTCATAAACGACGACGCATTCAGAGTGAGGAGGAGAGTGCAGGAGGGCTAACTAGGGATTTTCTTGGAGTTGGCTTGCAAACACTTTGTCACCCTTCATCAATTAATGGATGGATTTGA 1206 0.4411 MATNRFLCEICGKGFHRDQNLQLHRRGHNLPWKLKQRTSEEPKKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVRSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARLNAAYNMNNLLLGNMSFSTMATSLGPDMGANSSSIFKSVSIDNGTNNTTTSGLSLSMSEGCQPRDVQDIHHIGPAVTTAAMFGNPLASCSNPPPSDYQLSWVFGNKLLSSDSEELCASSLAVKHVAGSGDQLISIPSLYRSRHQSYQTTSANMPATSLLQKAAQIGATSTDHHPSFSRSFNMKCGNSQIQDRNEFCGTYGSISVFASLGNNLENSACDLSQMHSHKRRRIQSEEESAGGLTRDFLGVGLQTLCHPSSINGWI* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01885 401 FunFam Zinc finger protein MAGPIE 2 29 - -
Pte15g01885 401 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Pte15g01885 401 Gene3D Classic Zinc Finger 2 29 - -
Pte15g01885 401 SMART c2h2final6 82 102 IPR013087 -
Pte15g01885 401 SMART c2h2final6 6 28 IPR013087 -
Pte15g01885 401 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Pte15g01885 401 Gene3D Classic Zinc Finger 75 139 - -
Pte15g01885 401 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Pte15g01885 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Pte15g01885 401 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 389 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01885 Pte-Chr15 24526627 24528324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01885 1 402 IDZ Gene Family AT1G03840 49.234 5.19e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01885 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01885 K25870 - qsu:112011855 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01885 15 24526627 24528324 Pte15g01885 15 24526627 24528324 RCT